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SCNpilot_cont_300_bf_scaffold_421

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Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_421_1
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..9539)
DNA (9537bp) protein (3179aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003811C8F
Uncharacterized protein {ECO:0000313|EMBL:KJK03110.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 2
hypothetical protein
SCNpilot_cont_300_bf_scaffold_421_2
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9718..10710)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036688FC
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACA95898.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkh
SCNpilot_cont_300_bf_scaffold_421_3
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11091..13022)
DNA (1932bp) protein (644aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Me
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000374241D rbh
ATPase domain-containing protein
SCNpilot_cont_300_bf_scaffold_421_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13082..13813
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037804E0 rbh
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AGU51780.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov
SCNpilot_cont_300_bf_scaffold_421_5
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13870..14829)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM55 RepID=J3GTY0_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:EJM74952.1}; Flags: Precursor;; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source
Amidinotransferase rbh
SCNpilot_cont_300_bf_scaffold_421_6
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14856..15905)
DNA (1050bp) protein (350aa)
Ornithine cyclodeaminase (EC:4.3.1.12)
Probable ornithine cyclodeaminase protein {ECO:0000313|EMBL:CAD17634.1}; EC=4.3.1.12 {ECO:0000313|EMBL:CAD17634.1};; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
Ornithine cyclodeaminase n=3 Tax=Ralstonia solanacearum RepID=M4ULD9_RALSL rbh
SCNpilot_cont_300_bf_scaffold_421_7
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16046..16468
DNA (423bp) protein (141aa)
AsnC family transcriptional regulator n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036EF69C
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAE48684.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xan
AsnC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_421_8
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16638..17402
DNA (765bp) protein (255aa)
Glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein n=2 Tax=Ralstonia solanacearum RepID=F6G8C8_RALS8 rbh
glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein
Glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein {ECO:0000313|EMBL:AEG70957.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
SCNpilot_cont_300_bf_scaffold_421_9
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17428..18216
DNA (789bp) protein (263aa)
Putative amino acid transmembrane ABC transporter protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NGT3_RALSL rbh
putative amino acid transmembrane ABC transporter protein
Putative amino acid transmembrane ABC transporter protein {ECO:0000313|EMBL:CBJ40107.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstoni
SCNpilot_cont_300_bf_scaffold_421_10
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18213..18956
DNA (744bp) protein (248aa)
amino-acid transporter subunit ; ATP-binding component of ABC superfamily (EC:3.6.3.28)
Amino-acid transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CBJ53290.1}; EC=3.6.3.28 {ECO:0000313|EMBL:CBJ53290.1};; TaxID=859656 species="Bacteria; Proteobacteria; Betap
sulfate ABC transporter ATP-binding protein n=1 Tax=Ralstonia solanacearum RepID=UPI0003089B45 rbh
SCNpilot_cont_300_bf_scaffold_421_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19149..20642
DNA (1494bp) protein (498aa)
Cytosine/uracil/thiamine/allantoin permease n=1 Tax=Variovorax sp. CF313 RepID=J2STQ8_9BURK rbh
Cytosine/uracil/thiamine/allantoin permease {ECO:0000313|EMBL:EJL68972.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="V
cytosine/purines uracil thiamine allantoin permease
SCNpilot_cont_300_bf_scaffold_421_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20674..21411
DNA (738bp) protein (246aa)
hydantoin racemase (EC:5.1.99.5)
Asp/Glu racemase n=1 Tax=Variovorax paradoxus RepID=UPI00037A9321 rbh
Hydantoin racemase {ECO:0000313|EMBL:EJL68973.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_421_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21426..22190
DNA (765bp) protein (255aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ0_9BURK rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL68974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
transcriptional regulator, GntR family
SCNpilot_cont_300_bf_scaffold_421_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22200..22760
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EC157 rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:KEC74480.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhiz
hypothetical protein
SCNpilot_cont_300_bf_scaffold_421_15
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22887..24659
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380E137 rbh
diguanylate cyclase/phosphodiesterase Tax=GWA2_Burkholderiales_64_37_curated
diguanylate cyclase/phosphodiesterase
SCNpilot_cont_300_bf_scaffold_421_16
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24726..25709
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000363FC1B rbh
NAD-dependent epimerase/dehydratase family protein
NAD-dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:AGS23291.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacteri
SCNpilot_cont_300_bf_scaffold_421_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25861..27351
DNA (1491bp) protein (497aa)
Xanthine permease n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVQ2_VARPS rbh
xanthine permease
Xanthine permease {ECO:0000313|EMBL:ACS20555.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain
SCNpilot_cont_300_bf_scaffold_421_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27362..28186)
DNA (825bp) protein (275aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ2_9BURK rbh
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EJL68979.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=
aldo/keto reductase
SCNpilot_cont_300_bf_scaffold_421_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28251..29720)
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vari
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI00037370EB rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_421_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30071..31153
DNA (1083bp) protein (361aa)
tartrate dehydrogenase (EC:4.1.1.73)
tartrate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00036AD9E2 rbh
Tartrate dehydrogenase {ECO:0000313|EMBL:EJL68980.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;
SCNpilot_cont_300_bf_scaffold_421_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31193..32092
DNA (900bp) protein (300aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V324_VARPE rbh
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU39163.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
SCNpilot_cont_300_bf_scaffold_421_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32089..32916
DNA (828bp) protein (276aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component (Fragment) n=1 Tax=Variovorax sp. CF313 RepID=J2JHC8_9BURK rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:EJL67330.1}; Flags: Precursor; Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacte
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_300_bf_scaffold_421_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32924..33931
DNA (1008bp) protein (336aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000369688A rbh
Variovorax paradoxus strain MEDvA23 contig_97, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20565.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
oligopeptide/dipeptide ABC transporter ATPase
SCNpilot_cont_300_bf_scaffold_421_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33928..34743
DNA (816bp) protein (272aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003677269 rbh
ATPase component of various ABC-type transport systems with duplicated ATPase domain {ECO:0000313|EMBL:EJL73732.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteri
putative oligopeptide/dipeptide ABC transporter, ATP-binding protein
SCNpilot_cont_300_bf_scaffold_421_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34790..36283
DNA (1494bp) protein (498aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000362BE56 rbh
ABC-type dipeptide transport system, periplasmic component {ECO:0000313|EMBL:EJL73731.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comam
family 5 extracellular solute-binding protein
SCNpilot_cont_300_bf_scaffold_421_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36288..37691
DNA (1404bp) protein (468aa)
amidase n=1 Tax=Variovorax paradoxus RepID=UPI00036D4A35 rbh
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EJL73730.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
amidase
SCNpilot_cont_300_bf_scaffold_421_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37716..39164
DNA (1449bp) protein (483aa)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J3CL18_9BURK rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL73729.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovor
aldehyde dehydrogenase
SCNpilot_cont_300_bf_scaffold_421_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39174..40064
DNA (891bp) protein (297aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60) rbh
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2KKX1_9BURK rbh
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EJL73728.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
SCNpilot_cont_300_bf_scaffold_421_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40516..41187)
DNA (672bp) protein (224aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
TmRNA n=1 Tax=Variovorax sp. CF313 RepID=J2KG30_9BURK rbh
phosphoglycolate phosphatase
SCNpilot_cont_300_bf_scaffold_421_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41184..41903)
DNA (720bp) protein (240aa)
ubiquinone biosynthesis o-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CV62_9BURK rbh
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiqui
Displaying items 1-30 of 70 in total

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