ggKbase home page

SCNpilot_cont_300_bf_scaffold_3696

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3696_1
unknown

Not on your lists

comp(3..263)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3696_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

505..927
DNA (423bp) protein (141aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLZ8_9PROT
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira
TraR/DksA family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_3696_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1225..3237)
DNA (2013bp) protein (671aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=58133
Polyribonucleotide nucleotidyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKK3_9PROT rbh
polynucleotide phosphorylase/polyadenylase
SCNpilot_cont_300_bf_scaffold_3696_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3365..3634)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXM9_9PROT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
rpsO; 30S ribosomal protein S15
SCNpilot_cont_300_bf_scaffold_3696_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3779..4375)
DNA (597bp) protein (199aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPX6_9PROT
Photosynthetic protein synthase I {ECO:0000313|EMBL:KIO48015.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
electron transport protein SCO1/SenC
SCNpilot_cont_300_bf_scaffold_3696_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4385..5278)
DNA (894bp) protein (298aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
Protoheme IX farnesyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG97_9PROT rbh
protoheme IX farnesyltransferase
SCNpilot_cont_300_bf_scaffold_3696_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5409..5963)
DNA (555bp) protein (185aa)
Putative transmembrane protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGV0_9PROT
Membrane protein {ECO:0000313|EMBL:KIO48013.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
putative transmembrane protein
SCNpilot_cont_300_bf_scaffold_3696_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5989..6711)
DNA (723bp) protein (241aa)
Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGI6_9PROT rbh
Cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion {ECO:0000313|EMBL:KIO48012.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomona
SURF1 family protein
SCNpilot_cont_300_bf_scaffold_3696_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6772..6963
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF66_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61501.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
putative transmembrane protein
SCNpilot_cont_300_bf_scaffold_3696_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6990..7088)
DNA (99bp) protein (33aa)
Cytochrome c oxidase, subunit III n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y849_NITMU
cytochrome c oxidase subunit III
MFS transporter {ECO:0000313|EMBL:KIO48010.1}; Flags: Fragment;; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
Displaying 10 items

View Taxonomy