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SCNpilot_cont_300_bf_scaffold_1024

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1024_1
unknown

Not on your lists

3..83
DNA (81bp) protein (27aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1024_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(197..1096)
DNA (900bp) protein (300aa)
coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCS7_NITMU rbh
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
SCNpilot_cont_300_bf_scaffold_1024_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1122..2435)
DNA (1314bp) protein (438aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:KIO49579.1}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138, ECO:0000313|EMBL:KIO49579.1};; GARS {ECO:0000256|HAMAP
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCS8_NITMU rbh
SCNpilot_cont_300_bf_scaffold_1024_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2625..4214)
DNA (1590bp) protein (530aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
Bifunctional purine biosynthesis protein PurH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH23_9PROT rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nit
SCNpilot_cont_300_bf_scaffold_1024_5
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4319..4561)
DNA (243bp) protein (81aa)
DNA-binding protein Fis n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCT0_NITMU
Fis family transcriptional regulator
DNA-binding protein Fis {ECO:0000313|EMBL:ABB73441.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
SCNpilot_cont_300_bf_scaffold_1024_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4558..5571)
DNA (1014bp) protein (338aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosom
tRNA-dihydrouridine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF86_9PROT rbh
dihydrouridine synthase TIM-barrel protein nifR3
SCNpilot_cont_300_bf_scaffold_1024_7
unknown

Not on your lists

5573..6217
DNA (645bp) protein (215aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1024_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6090..7403)
DNA (1314bp) protein (438aa)
2-octaprenyl-6-methoxyphenol hydroxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQ69_9PROT rbh
2-octaprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:CCU61600.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
SCNpilot_cont_300_bf_scaffold_1024_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7520..7927)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCT3_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO49574.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1024_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7932..9251)
DNA (1320bp) protein (440aa)
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CCU61598.1}; EC=3.4.11.9 {ECO:0000313|EMBL:CCU61598.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadace
Xaa-Pro aminopeptidase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH17_9PROT rbh
peptidase M24
SCNpilot_cont_300_bf_scaffold_1024_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9452..10177)
DNA (726bp) protein (242aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000313|EMBL:CCU61597.1}; EC=2.7.7.24 {ECO:0000313|EMBL:CCU61597.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadal
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGR2_9PROT rbh
nucleotidyl transferase
SCNpilot_cont_300_bf_scaffold_1024_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10197..11198)
DNA (1002bp) protein (334aa)
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF85_9PROT rbh
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases {ECO:0000313|EMBL:CCU61596.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomo
aminoglycoside phosphotransferase
SCNpilot_cont_300_bf_scaffold_1024_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11326..11682
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQ64_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61595.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1024_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11804..13330
DNA (1527bp) protein (509aa)
MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGI4_9PROT rbh
MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein {ECO:0000313|EMBL:CCU61594.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosos
Mg chelatase subunit ChlI
SCNpilot_cont_300_bf_scaffold_1024_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13607..17089
DNA (3483bp) protein (1161aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitroso
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III alpha subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHD5_9PROT rbh
SCNpilot_cont_300_bf_scaffold_1024_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17208..17963
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP3_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48779.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1024_17
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18000..18251)
DNA (252bp) protein (84aa)
Ferredoxin n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JRT4_9GAMM
fdx; ferredoxin
Ferredoxin {ECO:0000313|EMBL:ESQ15000.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured
SCNpilot_cont_300_bf_scaffold_1024_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18262..18765)
DNA (504bp) protein (168aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR36_9PROT
Phosphopantetheine adenylyltransferase
SCNpilot_cont_300_bf_scaffold_1024_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18758..19339)
DNA (582bp) protein (194aa)
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 {ECO:0000313|EMBL:CCU61896.1}; EC=2.1.1.171 {ECO:0000313|EMBL:CCU61896.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betapro
16S rRNA (Guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG2_9PROT
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1024_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19385..20743)
DNA (1359bp) protein (453aa)
FIG015287: Zinc protease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHD8_9PROT rbh
Zinc protease {ECO:0000313|EMBL:KIO48775.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M16-like protein
SCNpilot_cont_300_bf_scaffold_1024_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20882..22354)
DNA (1473bp) protein (491aa)
FIG015547: peptidase, M16 family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHP8_9PROT rbh
Peptidase M16 {ECO:0000313|EMBL:KIO48831.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M16-like protein
SCNpilot_cont_300_bf_scaffold_1024_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22629..23624
DNA (996bp) protein (332aa)
Signal recognition particle receptor FtsY n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH87_9PROT rbh
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria;
signal recognition particle-docking protein FtsY
SCNpilot_cont_300_bf_scaffold_1024_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23679..24332
DNA (654bp) protein (218aa)
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR41_9PROT rbh
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) {ECO:0000313|EMBL:CCU61900.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadace
ABC transporter-like protein
SCNpilot_cont_300_bf_scaffold_1024_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24365..25237
DNA (873bp) protein (291aa)
Cell division protein FtsX n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG3_9PROT rbh
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1024_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25354..26202
DNA (849bp) protein (283aa)
RNA polymerase sigma factor RpoH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHE0_9PROT rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteri
RNA polymerase factor sigma-32
SCNpilot_cont_300_bf_scaffold_1024_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26243..26491)
DNA (249bp) protein (83aa)
YrbA protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH89_9PROT
YrbA protein {ECO:0000313|EMBL:CCU61904.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
BolA-like protein
SCNpilot_cont_300_bf_scaffold_1024_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26644..26946)
DNA (303bp) protein (101aa)
STAS domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHE5_9PROT
Anti-sigma-factor antagonist protein {ECO:0000313|EMBL:KIO48767.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
Sulfate transporter/antisigma-factor antagonist STAS
SCNpilot_cont_300_bf_scaffold_1024_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26951..27595)
DNA (645bp) protein (215aa)
Toluene tolerance n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5D8_NITMU rbh
Signal peptide protein {ECO:0000313|EMBL:KIO48766.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. N
toluene tolerance
SCNpilot_cont_300_bf_scaffold_1024_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27675..28157)
DNA (483bp) protein (161aa)
Uncharacterized ABC transporter, periplasmic component YrbD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH94_9PROT
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO48765.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source=
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1024_30
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28157..28954)
DNA (798bp) protein (266aa)
Uncharacterized ABC transporter, permease component YrbE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR50_9PROT rbh
ABC transporter permease {ECO:0000313|EMBL:KIO48764.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
Displaying items 1-30 of 36 in total

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