ggKbase home page

SCNpilot_cont_300_bf_scaffold_1490

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1490_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1072)
DNA (1071bp) protein (357aa)
riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193)
Riboflavin biosynthesis protein RibD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH00_9PROT rbh
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="
SCNpilot_cont_300_bf_scaffold_1490_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1145..1660)
DNA (516bp) protein (172aa)
Transcriptional repressor NrdR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFB9_9PROT
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae;
Transcriptional repressor nrdR
SCNpilot_cont_300_bf_scaffold_1490_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1734..2993)
DNA (1260bp) protein (420aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAM
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH55_9PROT rbh
SCNpilot_cont_300_bf_scaffold_1490_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3101..5518)
DNA (2418bp) protein (806aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1288494 species="Bacteria; P
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHG2_9PROT rbh
SCNpilot_cont_300_bf_scaffold_1490_5
Nitrosospira sp. NIJS18, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5630..6739)
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=354583 species="Bacter
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Nitrosospira sp. NIJS18 RepID=Q075G4_9PROT rbh
SCNpilot_cont_300_bf_scaffold_1490_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6938..8305)
DNA (1368bp) protein (456aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQT3_9PROT rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales;
dnaA; chromosomal replication initiation protein
SCNpilot_cont_300_bf_scaffold_1490_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8492..8626
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFC1_9PROT
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Ni
50S ribosomal protein L34
SCNpilot_cont_300_bf_scaffold_1490_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9280..10995
DNA (1716bp) protein (572aa)
Membrane protein insertase YidC n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHG5_9PROT rbh
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_018
60 kDa inner membrane insertion protein
SCNpilot_cont_300_bf_scaffold_1490_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11281..12498
DNA (1218bp) protein (406aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nit
tRNA modification GTPase MnmE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH07_9PROT rbh
trmE; tRNA modification GTPase TrmE
Displaying 9 items

View Taxonomy