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SCNpilot_cont_300_bf_scaffold_976

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_976_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(111..1406)
DNA (1296bp) protein (432aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLJ7_9PROT rbh
SCNpilot_cont_300_bf_scaffold_976_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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1455..2441
DNA (987bp) protein (329aa)
Bifunctional protein: zinc-containing alcohol dehydrogenase quinone oxidoreductase (NADPH:quinone reductase) Similar to arginate lyase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW44_9PROT rbh
Bifunctional protein: zinc-containing alcohol dehydrogenase quinone oxidoreductase (NADPH:quinone reductase) Similar to arginate lyase {ECO:0000313|EMBL:CCU63545.1}; TaxID=1288494 species="Bacteria; P
zinc-containing alcohol dehydrogenase superfamily protein
SCNpilot_cont_300_bf_scaffold_976_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2589..4088)
DNA (1500bp) protein (500aa)
leucyl aminopeptidase (EC:3.4.11.1)
Leucyl aminopeptidase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7L5_NITMU rbh
Peptidase M17 {ECO:0000313|EMBL:KIO49005.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_300_bf_scaffold_976_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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4294..5067
DNA (774bp) protein (258aa)
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:000
Thymidylate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI64_9PROT rbh
SCNpilot_cont_300_bf_scaffold_976_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5064..5582
DNA (519bp) protein (173aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomona
dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSC4_9PROT
SCNpilot_cont_300_bf_scaffold_976_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5944..7119)
DNA (1176bp) protein (392aa)
Ornithine decarboxylase / Arginine decarboxylase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGC6_9PROT rbh
Decarboxylase {ECO:0000313|EMBL:KIO49002.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Orn/DAP/Arg decarboxylase 2
SCNpilot_cont_300_bf_scaffold_976_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7484..8050)
DNA (567bp) protein (189aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146, ECO:0000313|EMBL:KIO49068.1}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_001
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=DCD_NITMU rbh
SCNpilot_cont_300_bf_scaffold_976_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8081..9169)
DNA (1089bp) protein (363aa)
Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like n=1 Tax=Nitrosospira sp. APG3 RepID=M5DI67_9PROT rbh
ATP-binding protein {ECO:0000313|EMBL:KIO49001.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV
hypothetical protein
SCNpilot_cont_300_bf_scaffold_976_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9531..11738
DNA (2208bp) protein (736aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:
Methionine--tRNA ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SYM_NITMU rbh
methionyl-tRNA synthetase
SCNpilot_cont_300_bf_scaffold_976_10
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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12030..14819
DNA (2790bp) protein (930aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21XF0_RHOFD rbh
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=GWA2_Rhodocyclales_65_20_curated
response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_cont_300_bf_scaffold_976_11
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15183..15893
DNA (711bp) protein (237aa)
Putative glutathione S-transferase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAH2_NITMU rbh
putative glutathione S-transferase
Putative glutathione S-transferase {ECO:0000313|EMBL:ABB74249.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitro
SCNpilot_cont_300_bf_scaffold_976_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15897..16859
DNA (963bp) protein (321aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW7_9PROT rbh
SCNpilot_cont_300_bf_scaffold_976_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16864..17793
DNA (930bp) protein (310aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG5_9PROT rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIO48768.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitro
ABC transporter-like protein
SCNpilot_cont_300_bf_scaffold_976_14
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17790..18545
DNA (756bp) protein (252aa)
ABC-2 protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5E1_NITMU rbh
hypothetical protein
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
SCNpilot_cont_300_bf_scaffold_976_15
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18596..18985)
DNA (390bp) protein (130aa)
Transcriptional regulator, HxlR family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DTZ2_9PROT
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:CCU62830.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="
HxlR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_976_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20077..20544)
DNA (468bp) protein (156aa)
Universal stress protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DM09_9PROT
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
uspa domain-containing protein
SCNpilot_cont_300_bf_scaffold_976_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20846..20947)
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAH6_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB74245.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira mul
Displaying 17 items

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