ggKbase home page

SCNpilot_cont_300_bf_scaffold_1449_3

Organism: SCNPILOT_CONT_300_BF_Nitrosospira_56_141

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 5865..8039

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1288494 species="Bacteria; Proteobacteria; Bet similarity UNIPROT
DB: UniProtKB
  • Identity: 83.4
  • Coverage: 722.0
  • Bit_score: 1232
  • Evalue 0.0
VacB/RNase II family 3'-5' exoribonuclease (EC:3.1.13.1) similarity KEGG
DB: KEGG
  • Identity: 80.9
  • Coverage: 724.0
  • Bit_score: 1204
  • Evalue 0.0
Ribonuclease R n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLJ3_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 83.5
  • Coverage: 722.0
  • Bit_score: 1233
  • Evalue 0.0
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Nitrosospira lacus → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2175
TTGTCAATGAACAGGAAACGCGGGCTTCGGCAGCTTGATCCTTATCTCGAACGCGAGAAAGAGCGTTACGGCCATGCTTTGCCCAGCCGGGAGTTCATCCTGCAAGTACTCAAGGATCAGGGTGTTCCCGTTGGCGAGGAAATATTGCAACGGCTTCTCGCCATCACGGAAAAGGAAAGCGAGCTTTTCAGCCGGCGGGTATCCGCCATGGAACGCGAAGGCCAGATCATGCGCAATCGCAAGGGCGATATCTGCGTTGTGGAGAAACTGGATCTCGTCAAGGGTACGGTCCAGGGGCACGCGGACGGGTTCGGATTTCTGATTCCCGATGACGGCGGTCCAGACTTGTTCCTGAGCGCCAAGGAAATGCGCAAAGTGCTGCATGGCGATCGTGCCATGGTGCGCGAGATCGGTATCGACCGCCGCGGGCGCAAGGAAGGGGCCATCGTGGAGGTGCTGGAGCATGCGGTGGCCCGGCTGGTGGGAAGGTTGCACGACGATCATGGCATCCTGTTCGTGGAAGCGGAAAACAGGCGCATCAGCCAGGATATCCTGATACCCAGGGGAGAGTCCATGGGCGCGAAAGCGGGACAGGTGGTCATGGTCGAGCTCATCCAGCAGCCAAGCAAGAGTGCCCAGCCTATAGGCCGCATTTTCGAGATTCTCGGGAATTACGCCGCCCCCGGCATGGAAATCGAAATTGCGCTGCGTAAACATGAATTACCCTATCAATTTCCGCCGCAGGTGAAAAAGCTTTCGGGGAAATTTCCGTCTGACGTCCTGCAATCTGAGCTTGAGGGGCGCATCGATATCCGCCATCTGCCGCTGGTGACGATAGACGGCGAGAGTGCACGGGATTTCGACGATGCGGTGTATTGCGAGCGCGATGGAACGGAATATAAATTATATGTCGCCATCGCGGATGTCAGCCATTATGTGCATCCTGGCGATGCGCTGGACCAGGAGGCATTGAATCGGGGTAATTCCGTGTATTTCCCGCGGCGCGTGATTCCGATGCTGCCGGAAGTGCTGTCCAACGGACTGTGCTCGCTCAACCCCCAGGTGGCGCGCTTGTGCGTGGTATGCGAAATGAGCCTCGATTCGGCAGGTAATTTTCGCAATTATGAATTTTATCCTGCAGTGATGTATTCCCATGCCCGGCTGACCTATACCGAGGTGGCGGCGATGCTCGAGAATCCTCGTGGAGAAGAAGCCAGGCGGCACCGCAAGCTGCTTCCCCACATACGGCTGCTCAACAGACTGTTCAAGATTCTGTTGAAAGCAAGAAAGAAACGAGGCGCCATCGATTTCGAAACCATCGAAACGCAGATGGTTTTCAATGACGAGGGAAAAATCGACTGCATTCTGCCGGTCAAGCGCAATGACGCCCATCGTTTGATCGAAGAATGCATGCTTGCAGCCAATGTCTGCGCATCGGATTTTCTGAAGAAACACGAACAGCCCACGCTGTATCGCATCCACGAGGGTCCGACCCCGGAAAAGCTCGTGGCATTGCGCGACTTTCTCAAGGAATTCGGCTTGCAACTTGGCGGTGGCGATCGGCCGAGCGCGAAGGATTATGCGAAGTCGCTCGAAAAAATAAGGGATCGGCCCGATGCCCAGCTGTTGCAGACGGTGATGCTGCGATCGTTGCGCCAGGCGGTTTACAGTCCGGATAACGTCGGTCACTTTGGCCTTGCTTATGAGTCCTATACTCACTTTACTTCGCCTATCAGGCGGTACCCCGATCTACTCGTCCACCGCGCCATCAAGGCGGTGCTCAGGAATAAGAGATATTCTCCGGGGGACTGGCACGGGCTGGGCGTGCATTGTTCCCAGACAGAGCGCCGTGCAGACGATGCGACCCGGGACGTGGAGTCATGGCTCAAGTGCTATTACATGCAGGACAAAATCGGAGAGGATTTTTCGGGAGTCATCAGCGGGGTGACAGGCTTCGGCCTTTTCGTCGCCCTGGATGGAATATATGTGGAAGGATTGGTGCATATTTCAGAGTTGCCCAGCGATTATTTTCATTTCGATTCCGCCAAGCACATGCTGTTGGGGGAGCGCAGCGGAAAGCGTTATCGCCTGGGTGACAGGGTCAGAGTCCGGCTGGTGAATGTCGATCTGGAGTCCAGCAAGATCGATTTCGTGCTGGCCGGAGAGGTCGAATAA
PROTEIN sequence
Length: 725
LSMNRKRGLRQLDPYLEREKERYGHALPSREFILQVLKDQGVPVGEEILQRLLAITEKESELFSRRVSAMEREGQIMRNRKGDICVVEKLDLVKGTVQGHADGFGFLIPDDGGPDLFLSAKEMRKVLHGDRAMVREIGIDRRGRKEGAIVEVLEHAVARLVGRLHDDHGILFVEAENRRISQDILIPRGESMGAKAGQVVMVELIQQPSKSAQPIGRIFEILGNYAAPGMEIEIALRKHELPYQFPPQVKKLSGKFPSDVLQSELEGRIDIRHLPLVTIDGESARDFDDAVYCERDGTEYKLYVAIADVSHYVHPGDALDQEALNRGNSVYFPRRVIPMLPEVLSNGLCSLNPQVARLCVVCEMSLDSAGNFRNYEFYPAVMYSHARLTYTEVAAMLENPRGEEARRHRKLLPHIRLLNRLFKILLKARKKRGAIDFETIETQMVFNDEGKIDCILPVKRNDAHRLIEECMLAANVCASDFLKKHEQPTLYRIHEGPTPEKLVALRDFLKEFGLQLGGGDRPSAKDYAKSLEKIRDRPDAQLLQTVMLRSLRQAVYSPDNVGHFGLAYESYTHFTSPIRRYPDLLVHRAIKAVLRNKRYSPGDWHGLGVHCSQTERRADDATRDVESWLKCYYMQDKIGEDFSGVISGVTGFGLFVALDGIYVEGLVHISELPSDYFHFDSAKHMLLGERSGKRYRLGDRVRVRLVNVDLESSKIDFVLAGEVE*