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SCNpilot_cont_300_bf_scaffold_1449

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1449_1
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2..4489
DNA (4488bp) protein (1496aa)
Uncharacterized protein n=1 Tax=Thauera sp. 27 RepID=N6YIN8_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO82048.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1449_2
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4460..5566)
DNA (1107bp) protein (369aa)
Probable integrase/recombinase protein n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D8J3_LARHH
Uncharacterized protein {ECO:0000313|EMBL:KJV33234.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;
integrase/recombinase protein
SCNpilot_cont_300_bf_scaffold_1449_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5865..8039
DNA (2175bp) protein (725aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1288494 species="Bacteria; Proteobacteria; Bet
VacB/RNase II family 3'-5' exoribonuclease (EC:3.1.13.1)
Ribonuclease R n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLJ3_9PROT rbh
SCNpilot_cont_300_bf_scaffold_1449_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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8042..8824
DNA (783bp) protein (261aa)
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW5_9PROT rbh
RNA methyltransferase TrmH
SCNpilot_cont_300_bf_scaffold_1449_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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8985..9362
DNA (378bp) protein (126aa)
30S ribosomal protein S6 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW34_9PROT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
rpsF; 30S ribosomal protein S6
SCNpilot_cont_300_bf_scaffold_1449_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9423..9668
DNA (246bp) protein (82aa)
Primosomal replication protein n n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKU0_9PROT
Primosomal replication protein n {ECO:0000256|HAMAP-Rule:MF_00720, ECO:0000256|SAAS:SAAS00194886}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadac
primosomal replication protein N
SCNpilot_cont_300_bf_scaffold_1449_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9685..9969
DNA (285bp) protein (95aa)
30S ribosomal protein S18 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLI7_9PROT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
rpsR; 30S ribosomal protein S18
SCNpilot_cont_300_bf_scaffold_1449_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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9978..10427
DNA (450bp) protein (150aa)
50S ribosomal protein L9 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW2_9PROT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
50S ribosomal protein L9
SCNpilot_cont_300_bf_scaffold_1449_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10602..11990
DNA (1389bp) protein (463aa)
Replicative DNA helicase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJD3_9PROT rbh
Replicative DNA helicase {ECO:0000313|EMBL:CCU63531.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira l
replicative DNA helicase
SCNpilot_cont_300_bf_scaffold_1449_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12109..13551)
DNA (1443bp) protein (481aa)
Predicted ATPase related to phosphate starvation-inducible protein PhoH n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW28_9PROT rbh
Predicted ATPase related to phosphate starvation-inducible protein PhoH {ECO:0000313|EMBL:CCU63530.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomon
PhoH-like protein
SCNpilot_cont_300_bf_scaffold_1449_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13548..14024)
DNA (477bp) protein (159aa)
Thiol peroxidase, Bcp-type {ECO:0000313|EMBL:CCU63529.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CCU63529.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomon
Thiol peroxidase, Bcp-type n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKT7_9PROT
Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
SCNpilot_cont_300_bf_scaffold_1449_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14205..14681)
DNA (477bp) protein (159aa)
Queuosine biosynthesis QueD, PTPS-I n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLI4_9PROT
Queuosine biosynthesis QueD, PTPS-I {ECO:0000313|EMBL:CCU63528.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nit
putative 6-pyruvoyl tetrahydropterin synthase
SCNpilot_cont_300_bf_scaffold_1449_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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14698..15558
DNA (861bp) protein (287aa)
Radical SAM domain protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKW0_9PROT rbh
Radical SAM domain protein {ECO:0000313|EMBL:CCU63527.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1449_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15644..15928)
DNA (285bp) protein (95aa)
Putative transcriptional regulator, XRE family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7N4_NITMU
XRE family transcriptional regulator {ECO:0000313|EMBL:KIO49022.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitr
XRE family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1449_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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16207..17286
DNA (1080bp) protein (360aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKT4_9PROT rbh
Displaying 15 items

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