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SCNpilot_cont_300_bf_scaffold_3406_3

Organism: SCNPILOT_CONT_300_BF_Nitrosospira_56_141

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 1830..3218

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000255|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000255|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_0 similarity UNIPROT
DB: UniProtKB
  • Identity: 77.9
  • Coverage: 434.0
  • Bit_score: 704
  • Evalue 8.90e-200
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RLMD_NITMU similarity UNIREF
DB: UNIREF100
  • Identity: 77.9
  • Coverage: 434.0
  • Bit_score: 704
  • Evalue 6.30e-200
  • rbh
rumA; 23S rRNA 5-methyluridine methyltransferase similarity KEGG
DB: KEGG
  • Identity: 77.9
  • Coverage: 434.0
  • Bit_score: 704
  • Evalue 1.80e-200

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Taxonomy

Nitrosospira multiformis → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1389
ATGGCTATAGCAGGCAAATTCAGCCGGAAATTATCGAAAACCGCGGACACATGCCTTCCTCCGCGTGAGAGGGCCATCCCGGTCACAGTGGAATCACTCGATCAGGAAGGCCGCGGCGTGGCCCACGCCGATGGAAAAGTAATTTTCATCGAAGGGGCGCTTCCTGGTGAAATAGTCACTTACAACGCCTACCGCAAAAAGGCCAGTTTCGAGCTGGCGCAGGTCGGTCAAGTACTTAAGCCCAGCTTTGCGCGGGTTTCCCCCCAGTGTTCGTACTTCGGCTTATGCGGCGGCTGCAGCATGCAGCATCTGGATGTTCGTGCACAGGTGGCGTCAAAACAACGTGTCCTGGAAGACAATCTCAGGCATATCGGACGCGTCGAGCCGGAACTGATATTGCCCGCCGTCCATGGCGAAGCCTGGGGCTACCGCTACCGGGCGCGGTTGTCCGTCCGCTATGTCAGGAAAAAGGACGCGGTGCTGGTAGGATTCCATGAGAAGCGAAGCAGTTTCGTTGCTGACATGCAGGGTTGCGAAGTCATCCCGCCCCGTGTGTCTGATCTCATCATGCCGTTGCGCCAGCTCGTGGCCAGCTTATCCATACGCGAACGCCTGCCGCAAATCGAAGTATCGCTTGGCGAGAACGTGGACGTATTGGTATTGCGCATCCTGGAGCCGCTGCTTCCAGAAGACGAAGCGCTCCTCAGAAATTTTGCCGACCGGCATCGCATCCAGTTCTTTCTCCAGCCTGGCGGGCCGCAGAGCGCCTTTCCTTTCTATCCCGAGAATGCGCCTGAATTAAGCTATATCCTGCCGGAATTCGATATTGTCATGCCGTTTCATCCCACGGAATTCACGCAGGTCAACCCGGCCATGAATCGCATGCTGGTCAGGCGGGTGCTGAGCCTGCTCAACCCGCAACCGGGCGAGCGTATCGCAGACCTGTTTTGCGGCCTGGGCAATTTCACCTTGCCGATAGCGCGACGCGGCGCCCAGGTGGTTGGTTATGAAGGCAGCACGGCCCTGCTGCAGCGCGCGCGGGAAAATGCGGACTGCAACGGGCTTGCATCCAATGCACAGTTTGCCGAAGCCAATCTCTTCGAAGTGAAGGAAGGCTGGATGCGGGAGCAGGGCCATTTCGACAAATTGCTGATAGACCCGCCCCGGGAGGGGGCAATCGCGGCGGCGACCTCCATTGATGAAGAAGGAGATACCAGTCCGAGGCGCATCGTGTATGTGTCCTGTAATCCGGCCACGCTGGCGCGGGATGCGGGAGTGCTGGTCCACAGGAAGGGATACACCCTGAAGGCGGCGGGAGTGATCAACATGTTTCCGCACACCGCGCATGTGGAATCCATTGCGCTGTTTGAGCAAGCCAGGGCGGGATAA
PROTEIN sequence
Length: 463
MAIAGKFSRKLSKTADTCLPPRERAIPVTVESLDQEGRGVAHADGKVIFIEGALPGEIVTYNAYRKKASFELAQVGQVLKPSFARVSPQCSYFGLCGGCSMQHLDVRAQVASKQRVLEDNLRHIGRVEPELILPAVHGEAWGYRYRARLSVRYVRKKDAVLVGFHEKRSSFVADMQGCEVIPPRVSDLIMPLRQLVASLSIRERLPQIEVSLGENVDVLVLRILEPLLPEDEALLRNFADRHRIQFFLQPGGPQSAFPFYPENAPELSYILPEFDIVMPFHPTEFTQVNPAMNRMLVRRVLSLLNPQPGERIADLFCGLGNFTLPIARRGAQVVGYEGSTALLQRARENADCNGLASNAQFAEANLFEVKEGWMREQGHFDKLLIDPPREGAIAAATSIDEEGDTSPRRIVYVSCNPATLARDAGVLVHRKGYTLKAAGVINMFPHTAHVESIALFEQARAG*