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SCNpilot_cont_300_bf_scaffold_1173

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1173_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29..871)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035E3EFB rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR77353.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved exported protein of unknown function
SCNpilot_cont_300_bf_scaffold_1173_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(883..2340)
DNA (1458bp) protein (486aa)
Prolidase {ECO:0000313|EMBL:EGF94622.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EGF94622.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimon
Prolidase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QXX8_BREDI
hydrolase
SCNpilot_cont_300_bf_scaffold_1173_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2480..3535
DNA (1056bp) protein (352aa)
Choloylglycine hydrolase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTS2_HYPDA
choloylglycine hydrolase
Choloylglycine hydrolase {ECO:0000313|EMBL:ADJ22634.1}; Flags: Precursor;; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source
SCNpilot_cont_300_bf_scaffold_1173_4
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(3578..4750)
DNA (1173bp) protein (391aa)
galactonate dehydratase (EC:4.2.1.6); K01684 galactonate dehydratase [EC:4.2.1.6] Tax=RBG_16_Chloroflexi_54_18_curated
Enolase superfamily enzyme related to L-alanine-DL-glutamate epimerase n=1 Tax=Saccharomonospora glauca K62 RepID=I1D7W5_9PSEU
mandelate racemase/muconate lactonizing protein
SCNpilot_cont_300_bf_scaffold_1173_5
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(4747..5847)
DNA (1101bp) protein (367aa)
oxidoreductase n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037855A6
oxidoreductase Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
oxidoreductase protein
SCNpilot_cont_300_bf_scaffold_1173_6
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5844..7829)
DNA (1986bp) protein (662aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00034C2C5D
ABC transporter permease {ECO:0000313|EMBL:KHJ54081.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirens
ribose ABC transporter permease
SCNpilot_cont_300_bf_scaffold_1173_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7826..9391)
DNA (1566bp) protein (522aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospi
rbsA1; Ribose import ATP-binding protein RbsA 1 (EC:3.6.3.17)
hypothetical protein n=1 Tax=Nocardiopsis prasina RepID=UPI000344CE06
SCNpilot_cont_300_bf_scaffold_1173_8
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9436..10434)
DNA (999bp) protein (333aa)
LacI family transcriptional regulator n=1 Tax=Brevibacillus sp. phR RepID=UPI00030C629D
D-ribose transporter subunit RbsB {ECO:0000313|EMBL:KDB02138.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Deflu
monosaccharide ABC transporter substrate-binding protein, cut2 family
SCNpilot_cont_300_bf_scaffold_1173_9
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10604..11380)
DNA (777bp) protein (259aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003650F0E
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:AEH84989.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Me
SCNpilot_cont_300_bf_scaffold_1173_10
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11470..12135
DNA (666bp) protein (222aa)
Amino acid ABC transporter, permease protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HW93_AZOC5
ABC transporter permease {ECO:0000313|EMBL:KJR62758.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum t
polar amino acid ABC transporter, inner membrane subunit
SCNpilot_cont_300_bf_scaffold_1173_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12132..12785
DNA (654bp) protein (218aa)
Amino acid ABC transporter, permease component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AQX2_AZOBR
amino acid ABC transporter, permease component
Amino acid ABC transporter, permease component {ECO:0000313|EMBL:CCC99833.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;"
SCNpilot_cont_300_bf_scaffold_1173_12
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12859..13902)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00036F0C1A
LacI family transcription regulator protein
LacI family transcription regulator protein {ECO:0000313|EMBL:ADJ63422.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" sour
SCNpilot_cont_300_bf_scaffold_1173_13
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

14008..15114
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AYM2_RUBXD
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1173_14
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15169..16041)
DNA (873bp) protein (291aa)
metH; B12-dependent methionine synthase (EC:2.1.1.13)
B12-dependent methionine synthase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M5U7_9RHIZ
Methionine synthase {ECO:0000313|EMBL:EZQ17703.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensi
SCNpilot_cont_300_bf_scaffold_1173_15
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15983..18877)
DNA (2895bp) protein (965aa)
metH; B12-dependent methionine synthase (EC:2.1.1.13)
methionine synthase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003609FEF
Methionine synthase {ECO:0000313|EMBL:EZQ17703.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensi
SCNpilot_cont_300_bf_scaffold_1173_16
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19122..19706)
DNA (585bp) protein (195aa)
Regulatory protein TetR n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TNC1_MESCW rbh
TetR family transcriptional regulator rbh
Regulatory protein TetR {ECO:0000313|EMBL:ADV11679.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium cice
SCNpilot_cont_300_bf_scaffold_1173_17
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19854..20798)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036980C3 rbh
Inosine-uridine preferring nucleoside hydrolase family protein {ECO:0000313|EMBL:AID28336.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Meso
Inosine/uridine-preferring nucleoside hydrolase rbh
SCNpilot_cont_300_bf_scaffold_1173_18
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21037..22074
DNA (1038bp) protein (346aa)
2OG-Fe(II) oxygenase n=1 Tax=Rhizobium loti RepID=UPI000366B7DB rbh
2OG-Fe(II) oxygenase superfamily protein {ECO:0000313|EMBL:AID28337.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="M
dioxygenase, isopenicillin N synthase rbh
SCNpilot_cont_300_bf_scaffold_1173_19
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22237..23094
DNA (858bp) protein (286aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KM57_MESAW rbh
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CDX32736.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" sou
periplasmic component of amino acid ABC-type transporter/signal transduction system rbh
SCNpilot_cont_300_bf_scaffold_1173_20
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23181..23957
DNA (777bp) protein (259aa)
cysteine ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI00036882C8
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:CDX32733.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizo
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
Displaying 20 items

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