ggKbase home page

SCNpilot_cont_300_bf_scaffold_1

Search features with annotation key words

Displaying items 1-30 of 601 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1_1
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..425)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F119B
Conserved repeat domain protein {ECO:0000313|EMBL:EIJ36146.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea
SCNpilot_cont_300_bf_scaffold_1_2
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(449..10369)
DNA (9921bp) protein (3307aa)
hypothetical protein, partial n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B2A61
CnaB domain-containing protein
Cna B domain protein {ECO:0000313|EMBL:ABX04292.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus
SCNpilot_cont_300_bf_scaffold_1_3
Flavobacteriales bacterium ALC-1, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11205..12761)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037719EF rbh
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:EDP70587.1}; TaxID=391603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium ALC-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1_4
Spirosoma panaciterrae, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13761..14558)
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003621752 rbh
SCNpilot_cont_300_bf_scaffold_1_5
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14962..15687)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003811392 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKD54003.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_1_6
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16043..19285)
DNA (3243bp) protein (1081aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C5FCF rbh
Uncharacterized protein {ECO:0000313|EMBL:AKD56935.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1_7
unknown

Not on your lists

19926..20054
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_8
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20093..20788)
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003697BF4 rbh
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEI49741.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella
SCNpilot_cont_300_bf_scaffold_1_9
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21182..23101)
DNA (1920bp) protein (640aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagacea
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000362A6C9 rbh
histidine kinase
SCNpilot_cont_300_bf_scaffold_1_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23250..25244)
DNA (1995bp) protein (665aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagacea
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036EBAFB
histidine kinase rbh
SCNpilot_cont_300_bf_scaffold_1_11
unknown

Not on your lists

25670..25816
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_12
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

25824..26393
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036C8B8A rbh
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB40403.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma li
SCNpilot_cont_300_bf_scaffold_1_13
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26477..29773)
DNA (3297bp) protein (1099aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C5608 rbh
coagulation factor 5/8 type domain-containing protein rbh
Coagulation factor 5/8 type domain protein {ECO:0000313|EMBL:ADB36422.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source
SCNpilot_cont_300_bf_scaffold_1_14
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29851..31857)
DNA (2007bp) protein (669aa)
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:AEI46931.1}; EC=3.2.1.37 {ECO:0000313|EMBL:AEI46931.1};; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytopha
glycoside hydrolase n=1 Tax=Spirosoma panaciterrae RepID=UPI000381686A rbh
xylan 1,4-beta-xylosidase rbh
SCNpilot_cont_300_bf_scaffold_1_15
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31988..32932)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003647665 rbh
esterase rbh
Esterase {ECO:0000313|EMBL:AEE48812.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (s
SCNpilot_cont_300_bf_scaffold_1_16
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33157..34074)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F150D rbh
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADB37599.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (s
SCNpilot_cont_300_bf_scaffold_1_17
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34154..34891)
DNA (738bp) protein (246aa)
(+)-neomenthol dehydrogenase {ECO:0000313|EMBL:CCH54740.1}; EC=1.1.1.208 {ECO:0000313|EMBL:CCH54740.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibris
short-chain dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003734506 rbh
short-chain dehydrogenase rbh
SCNpilot_cont_300_bf_scaffold_1_18
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(35585..36625)
DNA (1041bp) protein (347aa)
xylose isomerase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B5DDB rbh
xylose isomerase rbh
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ADB39338.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source
SCNpilot_cont_300_bf_scaffold_1_19
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(37397..38161)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037EF1B2 rbh
LytTR family two component transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AEI49891.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella
SCNpilot_cont_300_bf_scaffold_1_20
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(38158..39279)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036F0529 rbh
histidine kinase
Histidine kinase {ECO:0000313|EMBL:AKD56028.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_1_21
unknown

Not on your lists

39430..39555
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(40151..42205)
DNA (2055bp) protein (685aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003821AF9 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU62778.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source=
SCNpilot_cont_300_bf_scaffold_1_23
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

42423..43205
DNA (783bp) protein (261aa)
yagT; xanthine dehydrogenase YagT iron-sulfur-binding subunit (EC:1.-.-.-) rbh
Xanthine dehydrogenase YagT iron-sulfur-binding subunit {ECO:0000313|EMBL:CCH02685.1}; EC=1.-.-.- {ECO:0000313|EMBL:CCH02685.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagal
ferredoxin n=1 Tax=Spirosoma panaciterrae RepID=UPI000371B0C7 rbh
SCNpilot_cont_300_bf_scaffold_1_24
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

43223..44230
DNA (1008bp) protein (336aa)
FAD-binding molybdopterin dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036C7520 rbh
FAD-binding molybdopterin dehydrogenase rbh
FAD-binding molybdopterin dehydrogenase {ECO:0000313|EMBL:AKD57033.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotole
SCNpilot_cont_300_bf_scaffold_1_25
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

44319..46445
DNA (2127bp) protein (709aa)
xanthine dehydrogenase YagR molybdenum-binding subunit (EC:1.17.1.4) rbh
Xanthine dehydrogenase YagR molybdenum-binding subunit {ECO:0000313|EMBL:CCH02687.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CCH02687.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagal
xanthine dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI000377CF95 rbh
SCNpilot_cont_300_bf_scaffold_1_26
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(46473..46898)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI000370C750
Uncharacterized protein {ECO:0000313|EMBL:KIA86977.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp.
antibiotic biosynthesis monooxygenase
SCNpilot_cont_300_bf_scaffold_1_27
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(46929..47546)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035DDEAB rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH01676.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_1_28
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(47603..48322)
DNA (720bp) protein (240aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0C736_ACAM1
Uncharacterized protein {ECO:0000313|EMBL:KIF31759.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
short chain dehydrogenase/reductase family oxidoreductase
SCNpilot_cont_300_bf_scaffold_1_29
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48511..49284)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C1749 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:EHH02265.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium a
short-chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_1_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(49304..49762)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003797B9E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99155.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (
Displaying items 1-30 of 601 in total

View Taxonomy