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SCNpilot_cont_300_bf_scaffold_2553_15

Organism: SCNPILOT_CONT_300_BF_Myxococcales_67_4.9_partial

partial RP 38 / 55 MC: 3 BSCG 37 / 51 MC: 7 ASCG 12 / 38 MC: 1
Location: 12336..12920

Top 3 Functional Annotations

Value Algorithm Source
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FYE7_SORC5 similarity UNIREF
DB: UNIREF100
  • Identity: 49.7
  • Coverage: 179.0
  • Bit_score: 157
  • Evalue 1.20e-35
ECF family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 49.7
  • Coverage: 179.0
  • Bit_score: 157
  • Evalue 3.40e-36
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN95611.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" sourc similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 179.0
  • Bit_score: 157
  • Evalue 1.70e-35

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Taxonomy

Sorangium cellulosum → Sorangium → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
GTGGTCACGGCTCGAGTCCATTGCCCCACCCGTCCAACGGAGTCCGAGCTGACCACCGACGCACGCGACGCGCATGCTCGCTTGCGACGTCTTTTCGAGCAGGAGTACGACTTCGTCTGGCGGTCGCTACGCCGATTCGGCGTCGAGGCCGAGAACACCGAAGACGCCGCGCAGCAGGTGTTCGTCATCGTCTCGAAGAAGCTCGACCAGATCGAGCGCGAGGACGAGCGCCGCTACCTGTTCGGCATCGTCCTTCGGGTGGCATCGAACGCCCGCCGGTCGCGTGGGCGGCGCCGCGAGGTCTCCCAGGACAGCGTCGGCGAGCCCCTGGACGCCGCAGTGACCGCTGACGGTCTCATCGAGGAGAAGGAAGCACGCGCCCTGCTCGAGCGCGTGCTCGGCGCCCTCTCCGACGATCTGCGCGTCGTCTTCGTCTTGTTCGAGCTCGAAGAGATGACGCTGGTGGAGATCTCCGCCGTGCTCGGGATCCCTGTCGGGACGGCCACGTCACGGCTACGGCGCGCACGTGAGCAGTTTCGGACGATCGCTGCACGACTGCGACGGAGTGGAGGTTCGGATGTCTGA
PROTEIN sequence
Length: 195
VVTARVHCPTRPTESELTTDARDAHARLRRLFEQEYDFVWRSLRRFGVEAENTEDAAQQVFVIVSKKLDQIEREDERRYLFGIVLRVASNARRSRGRRREVSQDSVGEPLDAAVTADGLIEEKEARALLERVLGALSDDLRVVFVLFELEEMTLVEISAVLGIPVGTATSRLRRAREQFRTIAARLRRSGGSDV*