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SCNPILOT_CONT_300_BF_Rotifera_32_5_partial

SCNPILOT_CONT_300_BF_unknown_33_5
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Description

from TS-ESOM (extremely well defined)

Displaying items 151-200 of 803 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_4738 10 6647 bp 33.46 3.78 62.60
SCNpilot_cont_300_bf_scaffold_3293 10 6478 bp 33.70 4.22 56.78
SCNpilot_cont_300_bf_scaffold_4742 10 5059 bp 34.63 3.97 46.08
SCNpilot_cont_300_bf_scaffold_3808
Domain: Metazoa (50%)
10 7492 bp 33.49 4.22 71.16
SCNpilot_cont_300_bf_scaffold_18370 10 5581 bp 31.88 3.46 39.62
SCNpilot_cont_300_bf_scaffold_6607
Domain: Metazoa (50%)
10 6411 bp 30.43 4.15 46.33
SCNpilot_cont_300_bf_scaffold_9143 10 7884 bp 31.75 4.55 44.79
SCNpilot_cont_300_bf_scaffold_6610 10 6537 bp 31.93 5.07 48.55
SCNpilot_cont_300_bf_scaffold_20874 10 6008 bp 32.76 3.05 56.77
SCNpilot_cont_300_bf_scaffold_18634
Domain: Metazoa (50%)
10 6922 bp 31.62 4.06 53.53
SCNpilot_cont_300_bf_scaffold_5228 10 5492 bp 31.37 4.20 48.83
SCNpilot_cont_300_bf_scaffold_5488
Domain: Metazoa (50%)
10 8838 bp 33.03 3.35 50.27
SCNpilot_cont_300_bf_scaffold_5744
Domain: Metazoa (50%)
10 5893 bp 32.70 3.75 37.21
SCNpilot_cont_300_bf_scaffold_16411 10 9047 bp 34.71 3.69 40.72
SCNpilot_cont_300_bf_scaffold_3830 10 5847 bp 30.31 4.29 73.63
SCNpilot_cont_300_bf_scaffold_12607 10 7663 bp 32.62 3.73 34.29
SCNpilot_cont_300_bf_scaffold_4772 10 5914 bp 32.97 4.67 46.77
SCNpilot_cont_300_bf_scaffold_5245 10 8523 bp 32.70 4.65 59.10
SCNpilot_cont_300_bf_scaffold_3841 10 5832 bp 32.75 3.62 49.59
SCNpilot_cont_300_bf_scaffold_5511
Domain: Metazoa (50%)
10 5266 bp 33.23 3.86 63.98
SCNpilot_cont_300_bf_scaffold_4275 10 5421 bp 31.58 2.82 50.47
SCNpilot_cont_300_bf_scaffold_5010
Domain: Metazoa (55.56%)
9 5787 bp 30.78 4.12 57.28
SCNpilot_cont_300_bf_scaffold_5526 9 6738 bp 36.60 3.73 62.56
SCNpilot_cont_300_bf_scaffold_9962 9 6255 bp 32.47 4.13 56.98
SCNpilot_cont_300_bf_scaffold_6149 9 5903 bp 34.58 4.38 56.67
SCNpilot_cont_300_bf_scaffold_16201 9 5199 bp 36.22 4.01 44.66
SCNpilot_cont_300_bf_scaffold_7130 9 7476 bp 31.73 4.57 34.07
SCNpilot_cont_300_bf_scaffold_4810
Species: Adineta vaga (66.67%)
9 5011 bp 34.90 3.91 37.54
SCNpilot_cont_300_bf_scaffold_11021 9 5002 bp 32.49 4.22 61.66
SCNpilot_cont_300_bf_scaffold_16974 9 7590 bp 32.79 3.54 49.01
SCNpilot_cont_300_bf_scaffold_5800 9 6255 bp 31.06 3.81 54.24
SCNpilot_cont_300_bf_scaffold_9977
Domain: Metazoa (55.56%)
9 7324 bp 34.19 3.60 38.71
SCNpilot_cont_300_bf_scaffold_2774
Domain: Metazoa (55.56%)
9 8983 bp 34.59 4.14 67.49
SCNpilot_cont_300_bf_scaffold_4312 9 7128 bp 33.89 4.05 53.91
SCNpilot_cont_300_bf_scaffold_9986
Domain: Metazoa (55.56%)
9 5303 bp 35.11 3.88 46.05
SCNpilot_cont_300_bf_scaffold_5811 9 5109 bp 32.77 4.13 47.50
SCNpilot_cont_300_bf_scaffold_7423 9 7861 bp 33.53 3.54 55.34
SCNpilot_cont_300_bf_scaffold_10527
Domain: Metazoa (66.67%)
9 8004 bp 33.47 4.42 78.52
SCNpilot_cont_300_bf_scaffold_4080 9 8511 bp 33.50 4.25 34.65
SCNpilot_cont_300_bf_scaffold_4337
Domain: Metazoa (66.67%)
9 5369 bp 34.35 3.55 64.43
SCNpilot_cont_300_bf_scaffold_7171 9 6446 bp 32.69 3.62 35.88
SCNpilot_cont_300_bf_scaffold_6710 9 5788 bp 35.68 4.21 67.48
SCNpilot_cont_300_bf_scaffold_6457 9 7669 bp 31.36 3.73 54.84
SCNpilot_cont_300_bf_scaffold_9508 9 5328 bp 29.86 3.82 42.74
SCNpilot_cont_300_bf_scaffold_3925 9 5738 bp 31.60 5.64 64.46
SCNpilot_cont_300_bf_scaffold_9770 9 7081 bp 32.47 4.01 58.51
SCNpilot_cont_300_bf_scaffold_12963 9 6310 bp 33.69 3.62 45.74
SCNpilot_cont_300_bf_scaffold_2827 9 7229 bp 33.19 4.10 68.10
SCNpilot_cont_300_bf_scaffold_4620
Domain: Metazoa (55.56%)
9 7665 bp 33.35 4.52 71.08
SCNpilot_cont_300_bf_scaffold_8650
Domain: Metazoa (55.56%)
9 6928 bp 31.86 3.59 42.39
Displaying items 151-200 of 803 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.