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SCNPILOT_CONT_300_BF_Rotifera_32_5_partial

SCNPILOT_CONT_300_BF_unknown_33_5
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_cont_300_bf_UNK

Properties

Avg. coverage: 4.52 Longest contig: 17.88 Kbp Bin length: 5.19 Mbp GC content: 32.61 %
Contigs count: 803 Features count: 6041 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 MC: 3 BSCG 1 / 51 MC: 1 ASCG 3 / 38

Description

from TS-ESOM (extremely well defined)

Displaying items 701-750 of 803 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_4772 10 5914 bp 32.97 4.67 46.77
SCNpilot_cont_300_bf_scaffold_5688 8 7994 bp 32.80 4.68 52.91
SCNpilot_cont_300_bf_scaffold_3058 6 10033 bp 31.06 4.70 14.47
SCNpilot_cont_300_bf_scaffold_4188
Domain: Metazoa (55.56%)
9 8256 bp 32.38 4.71 74.20
SCNpilot_cont_300_bf_scaffold_6941 8 7708 bp 36.49 4.72 82.75
SCNpilot_cont_300_bf_scaffold_6694 11 8758 bp 29.88 4.73 67.17
SCNpilot_cont_300_bf_scaffold_10185 6 5628 bp 29.94 4.73 76.81
SCNpilot_cont_300_bf_scaffold_4768 4 5041 bp 29.16 4.73 9.34
SCNpilot_cont_300_bf_scaffold_2763 5 7409 bp 30.76 4.74 37.29
SCNpilot_cont_300_bf_scaffold_4234 12 5453 bp 33.56 4.74 74.27
SCNpilot_cont_300_bf_scaffold_9634 6 5117 bp 31.78 4.76 40.69
SCNpilot_cont_300_bf_scaffold_10929 6 5749 bp 32.09 4.76 64.55
SCNpilot_cont_300_bf_scaffold_3436 15 10621 bp 33.82 4.77 38.58
SCNpilot_cont_300_bf_scaffold_7976
Species: Adineta vaga (80%)
5 5108 bp 31.05 4.77 73.36
SCNpilot_cont_300_bf_scaffold_9874
Species: Adineta vaga (75%)
4 6844 bp 31.69 4.77 96.57
SCNpilot_cont_300_bf_scaffold_9988
Domain: Metazoa (50%)
8 5816 bp 33.89 4.79 71.80
SCNpilot_cont_300_bf_scaffold_5360
Domain: Metazoa (55.56%)
9 5240 bp 32.39 4.79 70.71
SCNpilot_cont_300_bf_scaffold_8528 6 7657 bp 31.51 4.79 44.51
SCNpilot_cont_300_bf_scaffold_24792
Species: Terriglobus roseus (50%)
2 5182 bp 26.42 4.80 15.40
SCNpilot_cont_300_bf_scaffold_6096 7 8519 bp 29.71 4.80 40.04
SCNpilot_cont_300_bf_scaffold_8233 3 5671 bp 33.12 4.82 27.72
SCNpilot_cont_300_bf_scaffold_4081
Domain: Metazoa (60%)
20 11978 bp 33.18 4.84 48.59
SCNpilot_cont_300_bf_scaffold_9500 16 10008 bp 33.31 4.84 61.81
SCNpilot_cont_300_bf_scaffold_9911
Phylum: Basidiomycota (55.56%)
9 8094 bp 33.42 4.84 69.31
SCNpilot_cont_300_bf_scaffold_4466 10 6261 bp 32.49 4.85 50.50
SCNpilot_cont_300_bf_scaffold_9849 5 5488 bp 33.62 4.89 36.35
SCNpilot_cont_300_bf_scaffold_12672 7 7260 bp 35.25 4.91 74.55
SCNpilot_cont_300_bf_scaffold_4054 4 5607 bp 32.32 4.92 80.52
SCNpilot_cont_300_bf_scaffold_4651 8 5128 bp 29.39 4.94 66.69
SCNpilot_cont_300_bf_scaffold_5666
Species: Naegleria gruberi (50%)
2 5129 bp 33.03 4.94 82.30
SCNpilot_cont_300_bf_scaffold_5324
Domain: Metazoa (60%)
5 5915 bp 30.21 4.96 67.35
SCNpilot_cont_300_bf_scaffold_2198 15 8809 bp 32.77 4.99 43.69
SCNpilot_cont_300_bf_scaffold_4798
Domain: Metazoa (50%)
6 5020 bp 35.94 5.00 58.15
SCNpilot_cont_300_bf_scaffold_4172 4 5511 bp 31.57 5.01 45.84
SCNpilot_cont_300_bf_scaffold_8199 13 12466 bp 30.71 5.01 53.79
SCNpilot_cont_300_bf_scaffold_4065
Domain: Metazoa (80%)
5 5596 bp 32.06 5.02 53.50
SCNpilot_cont_300_bf_scaffold_3915
Domain: Metazoa (62.5%)
8 5750 bp 34.37 5.02 53.37
SCNpilot_cont_300_bf_scaffold_10559
Domain: Metazoa (50%)
12 6600 bp 32.03 5.02 56.73
SCNpilot_cont_300_bf_scaffold_9102 4 5637 bp 30.57 5.03 84.09
SCNpilot_cont_300_bf_scaffold_3943 12 7772 bp 32.68 5.04 57.82
SCNpilot_cont_300_bf_scaffold_7850 6 5333 bp 32.10 5.04 38.59
SCNpilot_cont_300_bf_scaffold_3387 16 17884 bp 31.27 5.05 65.51
SCNpilot_cont_300_bf_scaffold_7009 10 5208 bp 31.66 5.06 47.24
SCNpilot_cont_300_bf_scaffold_10663 4 6251 bp 33.53 5.06 48.86
SCNpilot_cont_300_bf_scaffold_4743 7 6694 bp 30.25 5.06 57.72
SCNpilot_cont_300_bf_scaffold_10576
Domain: Metazoa (71.43%)
7 5147 bp 32.89 5.07 59.28
SCNpilot_cont_300_bf_scaffold_6610 10 6537 bp 31.93 5.07 48.55
SCNpilot_cont_300_bf_scaffold_20346 8 5389 bp 33.05 5.08 61.74
SCNpilot_cont_300_bf_scaffold_11116 10 5940 bp 34.11 5.11 54.85
SCNpilot_cont_300_bf_scaffold_6370 9 5048 bp 31.14 5.12 84.33
Displaying items 701-750 of 803 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.