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SCNPILOT_CONT_300_BF_Rotifera_32_5_partial

SCNPILOT_CONT_300_BF_unknown_33_5
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Description

from TS-ESOM (extremely well defined)

Displaying items 751-800 of 803 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_4587 7 5959 bp 32.64 5.14 62.33
SCNpilot_cont_300_bf_scaffold_3529 7 9905 bp 31.09 5.17 32.32
SCNpilot_cont_300_bf_scaffold_5246
Domain: Metazoa (57.14%)
7 6447 bp 35.04 5.18 66.91
SCNpilot_cont_300_bf_scaffold_4775
Species: Adineta vaga (50%)
6 9497 bp 33.27 5.23 62.99
SCNpilot_cont_300_bf_scaffold_2936 9 9241 bp 30.32 5.24 39.22
SCNpilot_cont_300_bf_scaffold_16620 5 5149 bp 32.47 5.26 27.73
SCNpilot_cont_300_bf_scaffold_7751 8 5206 bp 31.06 5.30 39.99
SCNpilot_cont_300_bf_scaffold_6445 7 6003 bp 33.48 5.31 87.51
SCNpilot_cont_300_bf_scaffold_7694
Domain: Metazoa (58.33%)
12 6411 bp 35.14 5.32 54.38
SCNpilot_cont_300_bf_scaffold_5995
Species: Tetrahymena thermophila (66.67%)
3 5129 bp 29.54 5.33 81.24
SCNpilot_cont_300_bf_scaffold_9030 9 5481 bp 31.84 5.50 82.27
SCNpilot_cont_300_bf_scaffold_2696 14 11851 bp 32.27 5.53 50.91
SCNpilot_cont_300_bf_scaffold_11597 8 5758 bp 31.68 5.54 33.19
SCNpilot_cont_300_bf_scaffold_3925 9 5738 bp 31.60 5.64 64.46
SCNpilot_cont_300_bf_scaffold_4863
Domain: Metazoa (50%)
6 8241 bp 34.91 5.67 54.06
SCNpilot_cont_300_bf_scaffold_20286 4 5703 bp 28.76 5.68 65.70
SCNpilot_cont_300_bf_scaffold_5077 17 10945 bp 32.89 5.73 65.26
SCNpilot_cont_300_bf_scaffold_9850
Species: Adineta vaga (50%)
8 6140 bp 28.57 5.80 44.51
SCNpilot_cont_300_bf_scaffold_2920 8 7058 bp 31.72 5.83 73.66
SCNpilot_cont_300_bf_scaffold_3959 10 5704 bp 32.40 5.85 66.80
SCNpilot_cont_300_bf_scaffold_6587
Species: Adineta vaga (66.67%)
6 5732 bp 32.57 6.00 86.78
SCNpilot_cont_300_bf_scaffold_4170
Domain: Metazoa (66.67%)
3 5512 bp 30.73 6.15 32.98
SCNpilot_cont_300_bf_scaffold_1477
Class: Bdelloidea (50%)
8 13278 bp 31.65 6.20 77.70
SCNpilot_cont_300_bf_scaffold_10607 3 5821 bp 32.28 6.21 94.52
SCNpilot_cont_300_bf_scaffold_37862 7 5827 bp 37.67 6.25 77.84
SCNpilot_cont_300_bf_scaffold_2655 7 8565 bp 32.91 6.27 38.28
SCNpilot_cont_300_bf_scaffold_2693
Class: Bdelloidea (71.43%)
7 10616 bp 31.18 6.50 48.44
SCNpilot_cont_300_bf_scaffold_3571
Domain: Metazoa (66.67%)
3 6129 bp 28.73 6.72 89.87
SCNpilot_cont_300_bf_scaffold_13671
Species: Haemonchus contortus (100%)
2 5152 bp 35.71 6.82 91.07
SCNpilot_cont_300_bf_scaffold_7792 6 9380 bp 31.32 6.93 21.04
SCNpilot_cont_300_bf_scaffold_6022
Species: Adineta vaga (50%)
2 5178 bp 40.03 7.22 98.67
SCNpilot_cont_300_bf_scaffold_4658 6 5125 bp 30.30 7.25 55.84
SCNpilot_cont_300_bf_scaffold_6625 4 5382 bp 32.35 7.32 45.32
SCNpilot_cont_300_bf_scaffold_20223 7 5174 bp 32.14 7.37 66.22
SCNpilot_cont_300_bf_scaffold_8886 12 6411 bp 31.41 7.52 73.89
SCNpilot_cont_300_bf_scaffold_4960 8 9059 bp 32.96 7.70 42.16
SCNpilot_cont_300_bf_scaffold_13951
Species: Adineta vaga (80%)
5 5856 bp 28.18 7.72 72.34
SCNpilot_cont_300_bf_scaffold_3759
Species: Philodina roseola (100%)
3 8905 bp 33.28 7.89 80.79
SCNpilot_cont_300_bf_scaffold_4802 3 5017 bp 33.79 7.90 16.86
SCNpilot_cont_300_bf_scaffold_4092
Species: Strongylocentrotus purpuratus (50%)
2 5574 bp 28.76 8.47 94.67
SCNpilot_cont_300_bf_scaffold_5656 9 10225 bp 32.43 8.74 38.38
SCNpilot_cont_300_bf_scaffold_13681 8 5055 bp 32.40 9.43 67.12
SCNpilot_cont_300_bf_scaffold_3610 4 6086 bp 35.06 9.69 62.90
SCNpilot_cont_300_bf_scaffold_8080 15 9540 bp 34.47 10.05 70.91
SCNpilot_cont_300_bf_scaffold_4958
Species: Adineta vaga (75%)
4 7207 bp 40.64 10.83 86.17
SCNpilot_cont_300_bf_scaffold_3126 6 7945 bp 32.56 11.09 48.52
SCNpilot_cont_300_bf_scaffold_3413 16 11584 bp 31.30 12.05 59.12
SCNpilot_cont_300_bf_scaffold_1693 6 11194 bp 30.33 14.15 78.10
SCNpilot_cont_300_bf_scaffold_3253 4 6533 bp 30.41 14.25 31.87
SCNpilot_cont_300_bf_scaffold_11761 6 5248 bp 30.53 14.59 38.41
Displaying items 751-800 of 803 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.