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SCNPILOT_CONT_300_BF_Rotifera_32_5_partial

SCNPILOT_CONT_300_BF_unknown_33_5
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_cont_300_bf_UNK

Properties

Avg. coverage: 4.52 Longest contig: 17.88 Kbp Bin length: 5.19 Mbp GC content: 32.61 %
Contigs count: 803 Features count: 6041 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 6 / 55 MC: 3 BSCG 1 / 51 MC: 1 ASCG 3 / 38

Description

from TS-ESOM (extremely well defined)

Displaying items 101-150 of 803 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_19871 6 5026 bp 34.70 4.39 33.49
SCNpilot_cont_300_bf_scaffold_4169
Domain: Metazoa (50%)
8 6090 bp 33.42 4.29 33.50
SCNpilot_cont_300_bf_scaffold_12110 5 5710 bp 30.25 3.78 33.52
SCNpilot_cont_300_bf_scaffold_20577 4 5756 bp 32.21 3.31 33.62
SCNpilot_cont_300_bf_scaffold_11934 4 6583 bp 33.42 3.28 33.81
SCNpilot_cont_300_bf_scaffold_5900 6 5293 bp 30.85 4.60 33.84
SCNpilot_cont_300_bf_scaffold_5877 12 11454 bp 35.14 3.79 33.84
SCNpilot_cont_300_bf_scaffold_5977 5 6278 bp 34.80 3.28 34.02
SCNpilot_cont_300_bf_scaffold_7130 9 7476 bp 31.73 4.57 34.07
SCNpilot_cont_300_bf_scaffold_10305
Domain: Metazoa (75%)
4 8556 bp 32.73 4.05 34.19
SCNpilot_cont_300_bf_scaffold_4314 3 5393 bp 30.89 4.19 34.27
SCNpilot_cont_300_bf_scaffold_12607 10 7663 bp 32.62 3.73 34.29
SCNpilot_cont_300_bf_scaffold_3343 10 8059 bp 33.54 3.96 34.32
SCNpilot_cont_300_bf_scaffold_10106 5 5426 bp 32.31 3.70 34.33
SCNpilot_cont_300_bf_scaffold_4648 6 5131 bp 30.93 3.38 34.44
SCNpilot_cont_300_bf_scaffold_11559 6 5674 bp 32.02 4.29 34.47
SCNpilot_cont_300_bf_scaffold_5594 6 5844 bp 34.05 3.78 34.50
SCNpilot_cont_300_bf_scaffold_13649 7 5884 bp 31.48 3.20 34.57
SCNpilot_cont_300_bf_scaffold_4080 9 8511 bp 33.50 4.25 34.65
SCNpilot_cont_300_bf_scaffold_7733
Domain: Metazoa (60%)
5 5369 bp 30.08 3.37 34.76
SCNpilot_cont_300_bf_scaffold_7274 10 7000 bp 33.09 3.51 34.80
SCNpilot_cont_300_bf_scaffold_12268 9 5712 bp 32.60 3.56 34.87
SCNpilot_cont_300_bf_scaffold_4019 7 6151 bp 34.43 3.35 35.07
SCNpilot_cont_300_bf_scaffold_12489
Domain: Metazoa (57.14%)
7 5469 bp 33.61 3.49 35.22
SCNpilot_cont_300_bf_scaffold_2967 7 6979 bp 34.09 4.10 35.25
SCNpilot_cont_300_bf_scaffold_7343
Domain: Metazoa (50%)
12 7427 bp 32.81 3.38 35.34
SCNpilot_cont_300_bf_scaffold_6377 9 7187 bp 33.41 3.88 35.36
SCNpilot_cont_300_bf_scaffold_4047
Domain: Metazoa (50%)
10 7271 bp 31.83 4.56 35.36
SCNpilot_cont_300_bf_scaffold_14451 4 5053 bp 34.67 3.73 35.38
SCNpilot_cont_300_bf_scaffold_4713 9 11951 bp 29.53 4.47 35.39
SCNpilot_cont_300_bf_scaffold_3587 5 6108 bp 32.40 4.03 35.41
SCNpilot_cont_300_bf_scaffold_11892 5 5776 bp 31.96 3.65 35.42
SCNpilot_cont_300_bf_scaffold_3086 5 6778 bp 31.59 4.33 35.45
SCNpilot_cont_300_bf_scaffold_7118 6 5359 bp 33.07 3.23 35.49
SCNpilot_cont_300_bf_scaffold_4553
Domain: Metazoa (58.33%)
12 9558 bp 31.35 4.04 35.59
SCNpilot_cont_300_bf_scaffold_8577
Class: Neoptera (50%)
6 6603 bp 32.68 3.73 35.62
SCNpilot_cont_300_bf_scaffold_7187 8 8939 bp 30.08 3.90 35.64
SCNpilot_cont_300_bf_scaffold_4693
Domain: Metazoa (62.5%)
8 6480 bp 32.31 4.34 35.79
SCNpilot_cont_300_bf_scaffold_8345 7 5486 bp 32.37 4.44 35.82
SCNpilot_cont_300_bf_scaffold_7171 9 6446 bp 32.69 3.62 35.88
SCNpilot_cont_300_bf_scaffold_4402 7 7364 bp 31.94 4.50 35.97
SCNpilot_cont_300_bf_scaffold_8600 5 5383 bp 34.26 3.40 36.00
SCNpilot_cont_300_bf_scaffold_4691 7 7107 bp 34.53 4.38 36.26
SCNpilot_cont_300_bf_scaffold_9849 5 5488 bp 33.62 4.89 36.35
SCNpilot_cont_300_bf_scaffold_4448 6 5278 bp 34.50 3.90 36.43
SCNpilot_cont_300_bf_scaffold_13538 8 5463 bp 32.73 4.27 36.52
SCNpilot_cont_300_bf_scaffold_8024
Class: Neoptera (71.43%)
7 7411 bp 32.22 3.45 36.55
SCNpilot_cont_300_bf_scaffold_24445
Domain: Metazoa (50%)
6 5456 bp 32.73 4.05 36.68
SCNpilot_cont_300_bf_scaffold_3694 7 8582 bp 35.95 4.36 36.74
SCNpilot_cont_300_bf_scaffold_9971 11 7768 bp 34.89 3.36 36.88
Displaying items 101-150 of 803 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.