ggKbase home page

SCNpilot_cont_300_bf_scaffold_127

Search features with annotation key words

Displaying items 1-30 of 1509 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_127_1
Candidatus Puniceispirillum marinum, Candidatus Puniceispirillum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..172
DNA (171bp) protein (57aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS
dihydroxy-acid dehydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000376A7BB
SCNpilot_cont_300_bf_scaffold_127_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159..1004
DNA (846bp) protein (282aa)
Sel1 domain-containing protein negative regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAF5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB83764.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
Sel1 domain-containing protein negative regulator
SCNpilot_cont_300_bf_scaffold_127_3
unknown

Not on your lists

1095..1325
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_127_4
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1352..2131)
DNA (780bp) protein (260aa)
Exodeoxyribonuclease III n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAF4_PELHB
Exodeoxyribonuclease III {ECO:0000313|EMBL:KKC32478.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
exodeoxyribonuclease III
SCNpilot_cont_300_bf_scaffold_127_5
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2168..3271)
DNA (1104bp) protein (368aa)
Penicillin-binding protein, beta-lactamase class C n=1 Tax=Caulobacter sp. AP07 RepID=J3AML1_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KKC32381.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
beta-lactamase family protein
SCNpilot_cont_300_bf_scaffold_127_6
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3351..3704)
DNA (354bp) protein (118aa)
Putative iron binding protein from the HesB_IscA_SufA family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAF2_PELHB
putative iron binding protein from the HesB_IscA_SufA family
Putative iron binding protein from the HesB_IscA_SufA family {ECO:0000313|EMBL:AEQ51502.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagi
SCNpilot_cont_300_bf_scaffold_127_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3794..4981
DNA (1188bp) protein (396aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9U4_PELHB rbh
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Dev
deoxyguanosinetriphosphate triphosphohydrolase
SCNpilot_cont_300_bf_scaffold_127_8
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5010..6755
DNA (1746bp) protein (582aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1502724 species="Bacteria; Pro
Arginine--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T9_PELHB
arginyl-tRNA synthetase
SCNpilot_cont_300_bf_scaffold_127_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6867..9464
DNA (2598bp) protein (866aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53622.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_127_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9540..10352
DNA (813bp) protein (271aa)
Segregation and condensation protein A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T7_PELHB
Chromosome segregation protein ScpA {ECO:0000313|EMBL:KFL25306.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
segregation and condensation protein A
SCNpilot_cont_300_bf_scaffold_127_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10349..11020
DNA (672bp) protein (224aa)
Segregation and condensation protein B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9U3_PELHB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
Segregation and condensation protein B
SCNpilot_cont_300_bf_scaffold_127_12
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11017..12117
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035FC105
Uncharacterized protein {ECO:0000313|EMBL:KKB83288.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ABC transporter
SCNpilot_cont_300_bf_scaffold_127_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12170..12388
DNA (219bp) protein (73aa)
Sec-independent protein translocase protein TatA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9U2_PELHB
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sou
twin-arginine translocation protein TatA
SCNpilot_cont_300_bf_scaffold_127_14
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12421..13209
DNA (789bp) protein (263aa)
Sec-independent protein translocase protein TatB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9U1_PELHB
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hy
Twin-arginine translocation protein TatB
SCNpilot_cont_300_bf_scaffold_127_15
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13212..14051
DNA (840bp) protein (280aa)
Sec-independent protein translocase protein TatC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9U0_PELHB
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sour
Twin-arginine translocation protein TatC
SCNpilot_cont_300_bf_scaffold_127_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14191..15516
DNA (1326bp) protein (442aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
Serine--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T6_PELHB
seryl-tRNA synthetase
SCNpilot_cont_300_bf_scaffold_127_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15513..16277
DNA (765bp) protein (255aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1535287 spe
5'-nucleotidase SurE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T5_PELHB rbh
5'-nucleotidase
SCNpilot_cont_300_bf_scaffold_127_18
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16562..17737
DNA (1176bp) protein (392aa)
Peptidase M23B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T3_PELHB
Peptidase M23B {ECO:0000313|EMBL:KFC69993.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
peptidase M23B
SCNpilot_cont_300_bf_scaffold_127_19
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17802..18785)
DNA (984bp) protein (328aa)
UPI0003CE5E56 related cluster n=1 Tax=unknown RepID=UPI0003CE5E56
Uncharacterized protein {ECO:0000313|EMBL:KKC32257.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_127_20
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18880..20562)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EII6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB76345.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
hypothetical protein
SCNpilot_cont_300_bf_scaffold_127_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20559..21032)
DNA (474bp) protein (158aa)
TadE-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9B8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB07008.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
TadE-like protein
SCNpilot_cont_300_bf_scaffold_127_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21330..22208)
DNA (879bp) protein (293aa)
ATP-dependent protease subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T2_PELHB rbh
ATP-DEPENDENT PROTEASE SUBUNIT {ECO:0000313|EMBL:CDP53631.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB00
ATP-dependent protease subunit
SCNpilot_cont_300_bf_scaffold_127_23
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22394..22744
DNA (351bp) protein (117aa)
Preprotein translocase subunit YajC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T1_PELHB
Preprotein translocase subunit YajC {ECO:0000313|EMBL:KKB83293.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insu
preprotein translocase subunit YajC
SCNpilot_cont_300_bf_scaffold_127_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22880..25438
DNA (2559bp) protein (853aa)
Protein-export membrane protein SecD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9T0_PELHB
Preprotein translocase subunit SecD/SecF {ECO:0000313|EMBL:KFL25298.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
protein-export membrane protein SecD
SCNpilot_cont_300_bf_scaffold_127_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25442..25831
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S9_PELHB
Membrane protein {ECO:0000313|EMBL:KKB12005.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_127_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25828..26667
DNA (840bp) protein (280aa)
Phytoene synthase {ECO:0000313|EMBL:CDP53635.1}; EC=2.5.1.32 {ECO:0000313|EMBL:CDP53635.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devos
Phytoene synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S8_PELHB rbh
phytoene synthase
SCNpilot_cont_300_bf_scaffold_127_27
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26738..28480
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RL28_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDP53636.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_127_28
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28464..29855)
DNA (1392bp) protein (464aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransfera
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S7_PELHB rbh
tRNA:m(5)U-54 MTase gid rbh
SCNpilot_cont_300_bf_scaffold_127_29
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29913..30554)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Streptomyces viridochromogenes Tue57 RepID=L8PU64_STRVR
Uncharacterized protein {ECO:0000313|EMBL:ELS58947.1}; TaxID=1160705 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue5
hypothetical protein
SCNpilot_cont_300_bf_scaffold_127_30
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30679..31326
DNA (648bp) protein (216aa)
Putative glutathione S-transferase-like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9S4_PELHB
Uncharacterized glutathione S-transferase-like pro tein {ECO:0000313|EMBL:CDP53638.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;"
putative glutathione S-transferase-like protein
Displaying items 1-30 of 1509 in total

View Taxonomy