ggKbase home page

SCNpilot_cont_300_bf_scaffold_6118

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_6118_1
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..2818
DNA (2817bp) protein (939aa)
Peptidase M16C associated domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCM7_PELHB
Peptidase M16 {ECO:0000313|EMBL:KFL26101.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
peptidase M16C associated domain protein
SCNpilot_cont_300_bf_scaffold_6118_2
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3278..4288
DNA (1011bp) protein (337aa)
mRNA 3-end processing factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY4_PELHB rbh
mRNA 3-end processing factor
mRNA 3-end processing factor {ECO:0000313|EMBL:AEQ53137.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacte
SCNpilot_cont_300_bf_scaffold_6118_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4285..5862
DNA (1578bp) protein (526aa)
ATP-dependent DNA ligase LigC {ECO:0000313|EMBL:CDP52869.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CDP52869.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobia
ATP-dependent DNA ligase LigC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY5_PELHB rbh
ATP-dependent DNA ligase LigC rbh
SCNpilot_cont_300_bf_scaffold_6118_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5862..6125
DNA (264bp) protein (88aa)
UvrB/UvrC protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4S6_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:CDP52870.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
UvrB/UvrC protein
SCNpilot_cont_300_bf_scaffold_6118_5
bacterium YEK0313, Bacteria

Not on your lists

6199..7434
DNA (1236bp) protein (412aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA10_PELHB
Oxygen sensor protein DosP {ECO:0000313|EMBL:CEJ14052.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
SCNpilot_cont_300_bf_scaffold_6118_6
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7416..8417
DNA (1002bp) protein (334aa)
Putative c-di-GMP phosphodiesterase or signal transduction protein n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z179_XANCT
Putative c-di-GMP phosphodiesterase or signal transduction protein {ECO:0000313|EMBL:EKU24715.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadacea
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
SCNpilot_cont_300_bf_scaffold_6118_7
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8414..8812)
DNA (399bp) protein (133aa)
Putative transcriptional regulator LiuR of leucine degradation pathway, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA09_PELHB
Putative transcriptional regulator LiuR of leucine degradation pathway, MerR family {ECO:0000313|EMBL:KFC69776.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hy
putative transcriptional regulator LiuR of leucine degradation pathway, MerR family
SCNpilot_cont_300_bf_scaffold_6118_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8799..10511)
DNA (1713bp) protein (571aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA08_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB82625.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
long-chain-fatty-acid--CoA ligase
Displaying 8 items

View Taxonomy