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SCNpilot_cont_300_bf_scaffold_1689

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1689_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1108
DNA (1107bp) protein (369aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
Pyruvate carboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG72_PELHB
pyruvate carboxyl transferase
SCNpilot_cont_300_bf_scaffold_1689_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1460..1840
DNA (381bp) protein (127aa)
Transcriptional regulator, XRE family n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VCT3_RHOPX
Uncharacterized protein {ECO:0000313|EMBL:KKB11008.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
XRE family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1689_3
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1837..2301)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2J0L9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL54588.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1689_4
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2376..2669)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG70_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB11007.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1689_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2774..4024
DNA (1251bp) protein (417aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hyd
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG69_PELHB rbh
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
SCNpilot_cont_300_bf_scaffold_1689_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4034..4678)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3IP75_9RHIZ
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDP53773.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="De
MOSC domain-containing protein
SCNpilot_cont_300_bf_scaffold_1689_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4675..5145)
DNA (471bp) protein (157aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U7M3_METS4
tRNA proofreading protein STM4549 {ECO:0000313|EMBL:CDP53774.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DD
YbaK/prolyl-tRNA synthetase associated domain-containing protein
SCNpilot_cont_300_bf_scaffold_1689_8
Streptomyces sp. PVA 94-07, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5135..5569)
DNA (435bp) protein (145aa)
Cell wall-associated hydrolase n=2 Tax=Streptomyces RepID=V4KDE1_9ACTO
Cell wall-associated hydrolase {ECO:0000313|EMBL:ESQ04073.1}; TaxID=1223307 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PVA 94-07.;
Cell wall-associated hydrolase
SCNpilot_cont_300_bf_scaffold_1689_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5569..6477)
DNA (909bp) protein (303aa)
Octaprenyl-diphosphate synthase {ECO:0000313|EMBL:CDP53772.1}; EC=2.5.1.- {ECO:0000313|EMBL:CDP53772.1};; EC=2.5.1.1 {ECO:0000313|EMBL:CDP53772.1};; EC=2.5.1.10 {ECO:0000313|EMBL:CDP53772.1};; EC=2.5.
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F6B79A
geranylgeranyl pyrophosphate synthase
SCNpilot_cont_300_bf_scaffold_1689_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6742..6924
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=RL32_METSB
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;
rpmF; 50S ribosomal protein L32
SCNpilot_cont_300_bf_scaffold_1689_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7001..8398
DNA (1398bp) protein (466aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=443610 species="Bacteria; Prote
Fumarate hydratase class II n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RG61_PELHB
fumarate hydratase class II
SCNpilot_cont_300_bf_scaffold_1689_12
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

comp(8499..8960)
DNA (462bp) protein (154aa)
transmembrane_regions 24..46 Tax=RBG_13_Spirochaetes_68_11_curated
SCNpilot_cont_300_bf_scaffold_1689_13
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9080..9532
DNA (453bp) protein (151aa)
UPI0003D04C7E related cluster n=1 Tax=unknown RepID=UPI0003D04C7E
Membrane protein {ECO:0000313|EMBL:KKC32754.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1689_14
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9645..9890)
DNA (246bp) protein (82aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC32700.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_cont_300_bf_scaffold_1689_15
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10078..10890)
DNA (813bp) protein (271aa)
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E32E91
SCNpilot_cont_300_bf_scaffold_1689_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10914..11600
DNA (687bp) protein (229aa)
SAM-dependent methyltransferase 2, in cluster with Hydroxyacylglutathione hydrolase {ECO:0000313|EMBL:CDP53760.1}; EC=3.1.2.6 {ECO:0000313|EMBL:CDP53760.1};; TaxID=1228055 species="Bacteria; Proteobac
SAM-dependent methyltransferase 2, in cluster with hydroxyacylglutathione hydrolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF22_PELHB
SAM-dependent methyltransferase 2, in cluster with hydroxyacylglutathione hydrolase
SCNpilot_cont_300_bf_scaffold_1689_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11605..12030)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C5A5
Uncharacterized protein {ECO:0000313|EMBL:KEQ54801.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlor
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1689_18
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12027..12308)
DNA (282bp) protein (94aa)
prevent-host-death family protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C5A4
Putative prevent-host-death protein {ECO:0000313|EMBL:KEQ54802.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphin
prevent-host-death family protein
Displaying 18 items

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