ggKbase home page

SCNpilot_cont_300_bf_scaffold_1727

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1727_1
Paenibacillus stellifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3..230
DNA (228bp) protein (76aa)
Uncharacterized protein {ECO:0000313|EMBL:AIQ65627.1}; TaxID=169760 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus stellifer.;"
SCNpilot_cont_300_bf_scaffold_1727_2
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(646..1065)
DNA (420bp) protein (140aa)
Transcriptional regulator, MerR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9H6_STAND
MerR family transcriptional regulator {ECO:0000313|EMBL:KFL25054.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp
MerR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1727_3
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1185..1799
DNA (615bp) protein (205aa)
Cation efflux protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CEG8_9RHOB
Cation efflux protein {ECO:0000313|EMBL:EFO32822.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD
Cation efflux protein
SCNpilot_cont_300_bf_scaffold_1727_4
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1796..2269
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2R1_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:KFC65719.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1727_5
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2271..2666)
DNA (396bp) protein (132aa)
Membrane protein, putative n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REH9_PELHB
Membrane protein, putative {ECO:0000313|EMBL:CDP53270.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1727_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2777..3427
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PES7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFL25042.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1727_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3715..4767
DNA (1053bp) protein (351aa)
CobW GTPase involved in cobalt insertion for B12 biosynthesis n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REI3_PELHB
Cobalamin biosynthesis protein CobW {ECO:0000313|EMBL:KFL25046.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
CobW GTPase involved in cobalt insertion for B12 biosynthesis
SCNpilot_cont_300_bf_scaffold_1727_8
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4767..7106
DNA (2340bp) protein (780aa)
Cobaltochelatase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FTN8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKC33177.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
cobN; Aerobic cobaltochelatase CobN subunit
SCNpilot_cont_300_bf_scaffold_1727_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7103..8497
DNA (1395bp) protein (465aa)
CobN component of cobalt chelatase involved in B12 biosynthesis n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REI5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL25047.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
CobN component of cobalt chelatase involved in B12 biosynthesis
SCNpilot_cont_300_bf_scaffold_1727_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8514..9155
DNA (642bp) protein (214aa)
Cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:CDP53262.1}; EC=2.5.1.17 {ECO:0000313|EMBL:CDP53262.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicr
Cob(I)alamin adenosyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REI6_PELHB
Cob(I)alamin adenosyltransferase
SCNpilot_cont_300_bf_scaffold_1727_11
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9163..9948)
DNA (786bp) protein (262aa)
UPI0003CDDEB7 related cluster n=1 Tax=unknown RepID=UPI0003CDDEB7 rbh
ABC transporter permease {ECO:0000313|EMBL:ESY28813.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp
znuB; cation ABC transporter permease
SCNpilot_cont_300_bf_scaffold_1727_12
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9951..10757)
DNA (807bp) protein (269aa)
Cation ABC transporter, ATP-binding protein, putative n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2L8X7_BURGS rbh
cation ABC transporter ATP-binding protein
Cation ABC transporter, ATP-binding protein,putative {ECO:0000313|EMBL:AJK47575.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
SCNpilot_cont_300_bf_scaffold_1727_13
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10754..11638)
DNA (885bp) protein (295aa)
UPI0003CECFA8 related cluster n=1 Tax=unknown RepID=UPI0003CECFA8 rbh
Cation ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESX85029.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;"
periplasmic solute binding family protein
SCNpilot_cont_300_bf_scaffold_1727_14
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11767..12204
DNA (438bp) protein (146aa)
Putative ferric uptake regulator, Fur family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11B55_MESSB
Fur family transcriptional regulator {ECO:0000313|EMBL:KFL25035.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
ferric uptake regulator family protein
SCNpilot_cont_300_bf_scaffold_1727_15
Escherichia fergusonii, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12212..13384)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=2 Tax=Escherichia fergusonii RepID=B7LQR3_ESCF3
hypothetical protein
Diguanylate cyclase {ECO:0000313|EMBL:KKA87196.1}; TaxID=564 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia fergusoni
SCNpilot_cont_300_bf_scaffold_1727_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14052..14888)
DNA (837bp) protein (279aa)
ABC transporter ATP-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030C8D10
Dipeptide transport ATP-binding protein DppF {ECO:0000313|EMBL:CDP51711.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Dev
ABC transporter
SCNpilot_cont_300_bf_scaffold_1727_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14885..15667)
DNA (783bp) protein (261aa)
UPI0003CFE4E3 related cluster n=1 Tax=unknown RepID=UPI0003CFE4E3
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:KFC64404.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
SCNpilot_cont_300_bf_scaffold_1727_18
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15759..17633)
DNA (1875bp) protein (625aa)
UPI0003CF6423 related cluster n=1 Tax=unknown RepID=UPI0003CF6423
Peptide ABC transporter permease {ECO:0000313|EMBL:KKC31771.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrop
ABC transporter permease
SCNpilot_cont_300_bf_scaffold_1727_19
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17683..19278)
DNA (1596bp) protein (532aa)
ABC transporter, periplasmic binding protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YBK8_9RHIZ rbh
Dipeptide transporter periplasmic-binding component of ABC superfamily {ECO:0000313|EMBL:CDX26225.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriac
ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_1727_20
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19488..19874
DNA (387bp) protein (129aa)
extradiol dioxygenase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E267
Extradiol dioxygenase {ECO:0000313|EMBL:KFL27613.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1727_21
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19953..20882
DNA (930bp) protein (310aa)
Aldo/keto reductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11JQ2_MESSB
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABG62373.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (str
SCNpilot_cont_300_bf_scaffold_1727_22
Halomonas sp. R57-5, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20884..21645)
DNA (762bp) protein (254aa)
membrane protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037CBF12
Fe(2+)/Mn(2+) transporter pcl1 {ECO:0000313|EMBL:CEP36394.1}; TaxID=1610576 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp
protein of unknown function DUF125 transmembrane
SCNpilot_cont_300_bf_scaffold_1727_23
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21587..22300)
DNA (714bp) protein (238aa)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y0Z3_RAMTT
dehydrogenase-like protein
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases)-like protein {ECO:0000313|EMBL:AEG92211.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacter
SCNpilot_cont_300_bf_scaffold_1727_24
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22313..22810)
DNA (498bp) protein (166aa)
Cupin n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G3A6_9RHIZ
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:CDP51726.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia s
cupin 2 domain-containing protein
SCNpilot_cont_300_bf_scaffold_1727_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22945..24159
DNA (1215bp) protein (405aa)
Fosmidomycin resistance protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035EB6A1
Fosmidomycin resistance protein {ECO:0000313|EMBL:KKB11804.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis
Fosmidomycin resistance protein
SCNpilot_cont_300_bf_scaffold_1727_26
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24267..25520)
DNA (1254bp) protein (418aa)
hydroxypyruvate reductase (EC:1.1.1.81)
Hydroxypyruvate reductase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YA77_9RHIZ
Hydroxypyruvate reductase {ECO:0000313|EMBL:KFL27617.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;
SCNpilot_cont_300_bf_scaffold_1727_27
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25604..26251
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J0D9_FRASU
Protein RcsF {ECO:0000313|EMBL:CDP51720.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1727_28
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26248..27387
DNA (1140bp) protein (380aa)
Metal-dependent hydrolase involved in phosphonate metabolism n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RCE9_9RHIZ
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:KKB08087.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinh
phnM; protein PhnM
SCNpilot_cont_300_bf_scaffold_1727_29
unknown

Not on your lists

27679..27870
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1727_30
unknown

Not on your lists

27931..28080
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

View Taxonomy