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SCNpilot_cont_300_bf_scaffold_1981

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1981_1
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..609
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CKY8_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EFO30187.1}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium s
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_2
Ruegeria mobilis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

606..2459
DNA (1854bp) protein (618aa)
Uncharacterized protein n=1 Tax=Ruegeria mobilis F1926 RepID=R0FBH4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ENZ90949.1}; TaxID=1265309 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria mobilis F19
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_3
unknown

Not on your lists

comp(2630..3106)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1981_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3231..3839)
DNA (609bp) protein (203aa)
Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G807_RHIML
Uncharacterized protein {ECO:0000313|EMBL:CDP51778.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_5
Herbaspirillum sp. YR522, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3937..5148)
DNA (1212bp) protein (404aa)
Arabinose efflux permease family protein n=1 Tax=Herbaspirillum sp. YR522 RepID=J3CIM1_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJN06619.1}; TaxID=1144342 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source
major facilitator superfamily permease
SCNpilot_cont_300_bf_scaffold_1981_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5417..6772
DNA (1356bp) protein (452aa)
MATE efflux family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8Y7_VARPE
Uncharacterized protein {ECO:0000313|EMBL:KFL26195.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
mate efflux family protein
SCNpilot_cont_300_bf_scaffold_1981_7

Not on your lists

comp(6789..7211)
DNA (423bp) protein (141aa)
Transcriptional regulator, HxlR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFJ7_PELHB
HxlR-like helix-turn-helix {ECO:0000313|EMBL:AIA18842.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
HxlR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1981_8

Not on your lists

7338..9779
DNA (2442bp) protein (814aa)
Beta-D-xylosidase {ECO:0000313|EMBL:ACY24766.1}; EC=3.2.1.37 {ECO:0000313|EMBL:ACY24766.1};; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Beta-D-xylosidase n=1 Tax=uncultured organism RepID=D8VMY1_9ZZZZ
beta-glucosidase
SCNpilot_cont_300_bf_scaffold_1981_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9898..10962
DNA (1065bp) protein (355aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CDP51826.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CDP51826.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphom
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFJ8_PELHB
D-alanyl-D-alanine carboxypeptidase
SCNpilot_cont_300_bf_scaffold_1981_10
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10959..11171)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFJ9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB77663.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_11
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11176..11628)
DNA (453bp) protein (151aa)
SCP-like extracellular protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFK1_PELHB
SCP-like extracellular protein
SCP-like extracellular protein {ECO:0000313|EMBL:AEQ53003.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibac
SCNpilot_cont_300_bf_scaffold_1981_12
unknown

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11847..12188
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1981_13
unknown

Not on your lists

comp(12391..12699)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1981_14
unknown

Not on your lists

12749..13459
DNA (711bp) protein (237aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1981_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13541..14413
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF10_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP51838.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14410..15873
DNA (1464bp) protein (488aa)
Putative Zn-dependent protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF09_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB11134.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative Zn-dependent protease
SCNpilot_cont_300_bf_scaffold_1981_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16080..16640)
DNA (561bp) protein (187aa)
CarD-like transcriptional regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF08_PELHB
CarD family transcriptional regulator {ECO:0000313|EMBL:KFL26190.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp
CarD-like transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1981_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16927..17265)
DNA (339bp) protein (113aa)
4Fe-4S ferredoxin n=1 Tax=Nitratireductor indicus C115 RepID=K2N3W4_9RHIZ
Ferredoxin {ECO:0000313|EMBL:KKB11138.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ferredoxin II
SCNpilot_cont_300_bf_scaffold_1981_19
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17402..17731)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000369642B
putative PemK family growth inhibitory protein
Putative PemK family growth inhibitory protein {ECO:0000313|EMBL:AGI74788.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;"
SCNpilot_cont_300_bf_scaffold_1981_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17728..17997)
DNA (270bp) protein (90aa)
Uncharacterized protein {ECO:0000313|EMBL:ABD09152.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
SCNpilot_cont_300_bf_scaffold_1981_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18016..18294)
DNA (279bp) protein (93aa)
UPI0003CFF6A9 related cluster n=1 Tax=unknown RepID=UPI0003CFF6A9
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:CDP51842.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria;
RNA-binding S4 domain-containing protein
SCNpilot_cont_300_bf_scaffold_1981_22
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18298..21372)
DNA (3075bp) protein (1025aa)
ATP-dependent DNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ6_PELHB
Helicase {ECO:0000313|EMBL:KKB11144.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ATP-dependent DNA helicase
SCNpilot_cont_300_bf_scaffold_1981_23
Bartonella vinsonii, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21498..21779)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Bartonella vinsonii subsp. berkhoffii str. Tweed RepID=N6UZ53_BARVB
Uncharacterized protein {ECO:0000313|EMBL:ENN95363.1}; TaxID=1094502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella vinsonii subs
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21766..22029)
DNA (264bp) protein (88aa)
DNA damage-inducible protein n=2 Tax=Sphingobium RepID=T0HXK6_9SPHN
DNA damage-inducible protein {ECO:0000313|EMBL:EZP70292.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomona
addiction module antitoxin
SCNpilot_cont_300_bf_scaffold_1981_25
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22569..23645
DNA (1077bp) protein (359aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XZK7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGY01299.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirill
NADPH-dependent FMN reductase
SCNpilot_cont_300_bf_scaffold_1981_26
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23652..24410)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL26178.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_27
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24622..24906
DNA (285bp) protein (95aa)
50S ribosomal protein L28 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REZ0_PELHB
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensi
50S ribosomal protein L28
SCNpilot_cont_300_bf_scaffold_1981_28
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25011..25646
DNA (636bp) protein (212aa)
Putative preQ0 transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REY9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10920.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
putative preQ0 transporter
SCNpilot_cont_300_bf_scaffold_1981_29
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25555..26055)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E41376
Uncharacterized protein {ECO:0000313|EMBL:GAN77696.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera ru
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1981_30
unknown

Not on your lists

comp(26048..26287)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003754794
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CPR19172.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp.
Displaying items 1-30 of 32 in total

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