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SCNpilot_cont_300_bf_scaffold_2068

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2068_1
Aphanomyces astaci, Aphanomyces, Saprolegniales, Eukaryota

Not on your lists

comp(3..1685)
DNA (1683bp) protein (561aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4D8F1
Uncharacterized protein {ECO:0000313|EMBL:ETV85983.1}; Flags: Fragment;; TaxID=112090 species="Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Aphanomyces.;" source="Aphanomyces
outer membrane autotransporter barrel domain-containing protein
SCNpilot_cont_300_bf_scaffold_2068_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1793..2935
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P412_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36216.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2068_3
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2973..3347)
DNA (375bp) protein (125aa)
Histone family protein DNA-binding protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QW97_METTR
histone family protein DNA-binding protein
Histone family protein DNA-binding protein {ECO:0000313|EMBL:CCJ06480.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="M
SCNpilot_cont_300_bf_scaffold_2068_4
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3464..3799)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Streptomyces scabies (strain 87.22) RepID=C9Z7U6_STRSW
L-rhamnose mutarotase {ECO:0000313|EMBL:KJL36224.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2068_5
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

comp(3809..5281)
DNA (1473bp) protein (491aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium JCVI-SC AAA005 RepID=UPI0002625F04 rbh
Uncharacterized protein {ECO:0000313|EMBL:EDM27049.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HT
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2068_6
unknown

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comp(5313..5813)
DNA (501bp) protein (167aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2068_7
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5847..6368)
DNA (522bp) protein (174aa)
Protein bugT-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y042_RAMTT
bug43; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
protein bugT
SCNpilot_cont_300_bf_scaffold_2068_8
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6365..6766)
DNA (402bp) protein (134aa)
Uncharacterized protein UPF0065 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UH2_CUPPJ
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:AAZ63212.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus
SCNpilot_cont_300_bf_scaffold_2068_9
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6763..7575)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000378EC24
choline-sulfatase
Choline-sulfatase {ECO:0000313|EMBL:AEQ51283.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium haloto
SCNpilot_cont_300_bf_scaffold_2068_10
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8158..8745)
DNA (588bp) protein (196aa)
Mandelate racemase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QMS5_9BURK
Mandelate racemase {ECO:0000313|EMBL:ETF00595.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
mandelate racemase/muconate lactonizing enzyme family protein
SCNpilot_cont_300_bf_scaffold_2068_11
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9378..10013
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 RepID=V8QNM0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ETF00915.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2068_12
Pseudomonas sp. 2(2015), Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10164..11582
DNA (1419bp) protein (473aa)
membrane protein n=1 Tax=Pseudomonas sp. HYS RepID=UPI00029A2155
Membrane protein {ECO:0000313|EMBL:KJK20432.1}; TaxID=1619950 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 2(2015).
OmpA/MotB domain-containing protein
SCNpilot_cont_300_bf_scaffold_2068_13
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11622..12491)
DNA (870bp) protein (290aa)
UspA n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GXW4_METFK
hypothetical protein
UspA {ECO:0000313|EMBL:ABE50923.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strai
SCNpilot_cont_300_bf_scaffold_2068_14
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12837..13049
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003631B99
Uncharacterized protein {ECO:0000313|EMBL:KKC38245.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2068_15
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13172..16096
DNA (2925bp) protein (975aa)
monovalent cation/H+ antiporter subunit A (EC:1.6.5.3)
Tmonovalent cation:proton antiporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKY5_9RHIZ
Na(+) H(+) antiporter subunit A {ECO:0000313|EMBL:KFC70646.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.
SCNpilot_cont_300_bf_scaffold_2068_16
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16097..16429
DNA (333bp) protein (111aa)
NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X4T4_OCHA4
putative monovalent cation/H+ antiporter subunit C
Cation:proton antiporter {ECO:0000313|EMBL:KJB91662.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella ae
SCNpilot_cont_300_bf_scaffold_2068_17
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16431..18017
DNA (1587bp) protein (529aa)
NADH dehydrogenase subunit N {ECO:0000313|EMBL:EAR23120.1}; EC=1.6.5.3 {ECO:0000313|EMBL:EAR23120.1};; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodos
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364D478
cation:proton antiporter
SCNpilot_cont_300_bf_scaffold_2068_18
unknown

Not on your lists

18014..18106
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying 18 items

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