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SCNpilot_cont_300_bf_scaffold_2162

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2162_1
unknown

Not on your lists

comp(1..402)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2162_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(629..1168)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R856_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB83791.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2162_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1809..2081)
DNA (273bp) protein (91aa)
Histone-like protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PDZ6_9SPHN
Transcriptional regulator HU subunit alpha {ECO:0000313|EMBL:KKB82815.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devos
hup; DNA-binding protein HU
SCNpilot_cont_300_bf_scaffold_2162_4

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comp(2291..3484)
DNA (1194bp) protein (398aa)
MFS transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B4AB7
TetA {ECO:0000313|EMBL:AIA17962.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tetA; TetA
SCNpilot_cont_300_bf_scaffold_2162_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3728..5866
DNA (2139bp) protein (713aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PE94_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36673.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2162_6

Not on your lists

comp(5884..7077)
DNA (1194bp) protein (398aa)
Tetracycline resistance protein n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JIR6_9RHIZ
TetA {ECO:0000313|EMBL:AIA19224.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tetA; TetA
SCNpilot_cont_300_bf_scaffold_2162_7
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7149..7835
DNA (687bp) protein (229aa)
Transcriptional regulator, TetR family n=2 Tax=Agrobacterium tumefaciens complex RepID=Q7CUB2_AGRT5
TetR family transcriptional regulator {ECO:0000313|EMBL:KKC34213.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psy
tetR; TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2162_8
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7867..8196)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC39226.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2162_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8190..9674)
DNA (1485bp) protein (495aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=443610
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB6_PELHB
aspartyl-tRNA amidotransferase subunit A
SCNpilot_cont_300_bf_scaffold_2162_10
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9717..10208)
DNA (492bp) protein (164aa)
N-acetyltransferase GCN5 n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3HYJ3_9RHIZ
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EMG52722.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
N-acetyltransferase GCN5
SCNpilot_cont_300_bf_scaffold_2162_11
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10205..10492)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_0012
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB8_PELHB
aspartyl-tRNA amidotransferase subunit C
SCNpilot_cont_300_bf_scaffold_2162_12
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10528..11049)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28546.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2162_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11046..11531)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003691728
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDN53974.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" sourc
SCNpilot_cont_300_bf_scaffold_2162_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11503..11733)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037D27F0
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDN53973.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" sourc
SCNpilot_cont_300_bf_scaffold_2162_15
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11809..12249
DNA (441bp) protein (147aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=443610 specie
Putative Holliday junction resolvase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBC0_PELHB
putative Holliday junction resolvase
SCNpilot_cont_300_bf_scaffold_2162_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12310..13272
DNA (963bp) protein (321aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=429727 species="Bac
Aspartate carbamoyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBC1_PELHB
aspartate carbamoyltransferase
SCNpilot_cont_300_bf_scaffold_2162_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13269..14009
DNA (741bp) protein (247aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=46914 species="Bacteria; Proteobacteria; Alphapr
Dihydroorotase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBC2_PELHB
dihydroorotase
Displaying 17 items

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