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SCNpilot_cont_300_bf_scaffold_2265

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2265_1
unknown

Not on your lists

comp(2..301)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2265_2
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

500..1855
DNA (1356bp) protein (452aa)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC03_PELHB rbh
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
ribosomal protein S12p Asp88 methylthiotransferase
SCNpilot_cont_300_bf_scaffold_2265_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1855..2475
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000367F696
Transcriptional negative regulator {ECO:0000313|EMBL:GAN77178.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acid
FMN-binding negative transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2265_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2472..3488)
DNA (1017bp) protein (339aa)
Cysteine synthase A n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J5M9_ANAD2
Pyridoxal-5'-phosphate-dependent protein beta subunit
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:AHG93487.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SCNpilot_cont_300_bf_scaffold_2265_5
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3570..3896)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003634CA0
putative transposase for insertion sequence element Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
putative transposase for insertion sequence element
SCNpilot_cont_300_bf_scaffold_2265_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3911..4285)
DNA (375bp) protein (125aa)
transposase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00035CC5B5
putative transposase-related protein
Putative transposase-related protein {ECO:0000313|EMBL:CAK03534.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizo
SCNpilot_cont_300_bf_scaffold_2265_7
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4361..4741)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00030F3C46
PilT protein domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PilT protein domain-containing protein
SCNpilot_cont_300_bf_scaffold_2265_8
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4741..4959)
DNA (219bp) protein (73aa)
Transcriptional regulator, AbrB family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UBY4_9RHIZ
Looped-hinge helix DNA binding domain, AbrB family
Looped-hinge helix DNA binding domain, AbrB family {ECO:0000313|EMBL:CDN54345.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium g
SCNpilot_cont_300_bf_scaffold_2265_9
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5071..5499)
DNA (429bp) protein (143aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH4_PELHB
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_cont_300_bf_scaffold_2265_10
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5493..6299)
DNA (807bp) protein (269aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH4_PELHB
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
ATP-dependent Clp protease ATP-binding subunit ClpX
SCNpilot_cont_300_bf_scaffold_2265_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6470..7096)
DNA (627bp) protein (209aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A1F6_STAND
SCNpilot_cont_300_bf_scaffold_2265_12
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7245..7856
DNA (612bp) protein (204aa)
Putative bacterial sensory transduction regulator n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9R374_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EYD76735.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrob
SCNpilot_cont_300_bf_scaffold_2265_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7983..9233
DNA (1251bp) protein (417aa)
Putative cytochrome P450 hydroxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH7_PELHB
Cytochrome P450 {ECO:0000313|EMBL:KFL32557.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cytochrome P450 hydroxylase
SCNpilot_cont_300_bf_scaffold_2265_14
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9246..10955)
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08466.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2265_15
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11085..11438)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI0003699F86
Glyoxalase {ECO:0000313|EMBL:KFG69994.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Glyoxalase
SCNpilot_cont_300_bf_scaffold_2265_16
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11497..12312)
DNA (816bp) protein (272aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAI0_PELHB
cell division trigger factor
SCNpilot_cont_300_bf_scaffold_2265_17
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13218..13907
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Klebsiella oxytoca E718 RepID=I6WVM9_KLEOX
Uncharacterized protein {ECO:0000313|EMBL:KIJ72325.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2265_18
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14184..14522
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAI1_PELHB
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KKC38729.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epide
nitrogen regulatory protein P-II
SCNpilot_cont_300_bf_scaffold_2265_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14566..15975
DNA (1410bp) protein (470aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae;
Glutamine synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAI2_PELHB
glutamine synthetase type I
SCNpilot_cont_300_bf_scaffold_2265_20
unknown

Not on your lists

comp(16077..16250)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2265_21
unknown

Not on your lists

comp(16448..16861)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2265_22
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17121..17510
DNA (390bp) protein (130aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1082931 species="Ba
DNA topoisomerase 4 subunit B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ3_PELHB
Topoisomerase IV subunit B
SCNpilot_cont_300_bf_scaffold_2265_23
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17323..18471)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECR6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38600.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofacie
SCNpilot_cont_300_bf_scaffold_2265_24
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18491..19051
DNA (561bp) protein (187aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1121477 species="Ba
DNA topoisomerase 4 subunit B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ3_PELHB
Topoisomerase IV subunit B
SCNpilot_cont_300_bf_scaffold_2265_25
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19203..20618
DNA (1416bp) protein (472aa)
ATP-dependent RNA helicase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ4_PELHB rbh
DEAD/DEAH box helicase {ECO:0000313|EMBL:KKB08456.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ATP-dependent RNA helicase
SCNpilot_cont_300_bf_scaffold_2265_26
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20761..21813
DNA (1053bp) protein (351aa)
Diguanylate cyclase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAJ5_PELHB
Diguanylate cyclase {ECO:0000313|EMBL:KFC72534.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_2265_27
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21821..23089)
DNA (1269bp) protein (423aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EI86_BRASB rbh
SCNpilot_cont_300_bf_scaffold_2265_28
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23157..24983)
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9P6_PELHB
glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
SCNpilot_cont_300_bf_scaffold_2265_29
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24983..26350)
DNA (1368bp) protein (456aa)
Bifunctional protein GlmU n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9P7_PELHB
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
N-acetylglucosamine-1-phosphate uridyltransferase
SCNpilot_cont_300_bf_scaffold_2265_30
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26480..27265
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R9P8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC32442.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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