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SCNpilot_cont_300_bf_scaffold_2389

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2389_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..601
DNA (600bp) protein (200aa)
ATPase component of ABC-type sugar transporter n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYF2_9RHIZ
ATPase component of ABC-type sugar transporter {ECO:0000313|EMBL:EIM28994.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" sourc
putative sugar ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_2389_2
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(676..1815)
DNA (1140bp) protein (380aa)
Succinylglutamate desuccinylase/aspartoacylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I2_PELHB
Succinylglutamate desuccinylase {ECO:0000313|EMBL:KKB11913.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis
succinylglutamate desuccinylase/aspartoacylase
SCNpilot_cont_300_bf_scaffold_2389_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1812..2564)
DNA (753bp) protein (251aa)
amino acid ABC transporter permease n=1 Tax=Leucothrix mucor RepID=UPI0003B32D9B
Histidine ABC transporter, permease protein HisM {ECO:0000313|EMBL:CDP50341.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source=
histidine ABC transporter permease HisM
SCNpilot_cont_300_bf_scaffold_2389_4
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2561..3418)
DNA (858bp) protein (286aa)
ABC transporter, permease protein, HisMQ family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I0_PELHB
ABC transporter, permease protein, HisMQ family {ECO:0000313|EMBL:CDP50340.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="
ABC transporter permease, HisMQ family
SCNpilot_cont_300_bf_scaffold_2389_5
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3477..3683)
DNA (207bp) protein (69aa)
ABC basic amino acid transporter, solute-binding protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V6S3_9RHOB
His/Glu/Gln/Arg/opine family ABC transporter {ECO:0000313|EMBL:KFC62519.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Dev
extracellular solute-binding protein
SCNpilot_cont_300_bf_scaffold_2389_6
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3635..4186)
DNA (552bp) protein (184aa)
His/Glu/Gln/Arg/opine family ABC transporter, periplasmic His/Glu/Gln/Arg/opine family-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H9_PELHB
Amino acid ABC transporter {ECO:0000313|EMBL:KFL26993.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.
His/Glu/Gln/Arg/opine family ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_2389_7
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4276..5067)
DNA (792bp) protein (264aa)
Histidine ABC transporter, ATP-binding protein HisP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H8_PELHB
Amino acid transporter {ECO:0000313|EMBL:KKB84294.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
histidine ABC transporter ATP-binding protein HisP
SCNpilot_cont_300_bf_scaffold_2389_8
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5182..5976)
DNA (795bp) protein (265aa)
Two-component response regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMD0_9RHIZ
Two-component response regulator {ECO:0000313|EMBL:KKB84290.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DS
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_2389_9
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6081..6332
DNA (252bp) protein (84aa)
Uncharacterized protein n=3 Tax=Ochrobactrum RepID=M5JJV9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC62523.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2389_10
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6333..6881
DNA (549bp) protein (183aa)
RNA polymerase sigma factor n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J868_AGRRK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
rpoE4; RNA polymerase sigma factor
SCNpilot_cont_300_bf_scaffold_2389_11
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6887..7315)
DNA (429bp) protein (143aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP50332.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_cont_300_bf_scaffold_2389_12
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7425..7793)
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX34668.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
SCNpilot_cont_300_bf_scaffold_2389_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7909..8082
DNA (174bp) protein (58aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI00037F6CE0
cAMP-binding proteins {ECO:0000313|EMBL:CDP50331.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
fixK; Fumarate and nitrate reduction regulatory protein
SCNpilot_cont_300_bf_scaffold_2389_14
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8137..9084
DNA (948bp) protein (316aa)
diacylglycerol kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003825570
Uncharacterized protein {ECO:0000313|EMBL:KKC36558.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
diacylglycerol kinase
SCNpilot_cont_300_bf_scaffold_2389_15
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9143..9376)
DNA (234bp) protein (78aa)
Uncharacterized protein {ECO:0000313|EMBL:CDP50329.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
SCNpilot_cont_300_bf_scaffold_2389_16
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9459..9902)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039A1EE7
Uncharacterized protein {ECO:0000313|EMBL:KFC62528.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Hypothetical protein
SCNpilot_cont_300_bf_scaffold_2389_17
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9907..10350)
DNA (444bp) protein (148aa)
DNA gyrase subunit B n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B4DC6F
Uncharacterized protein {ECO:0000313|EMBL:KFC62529.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2389_18
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10527..10682)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9D6_PHEZH
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2389_19
unknown

Not on your lists

comp(10714..10881)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2389_20
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11054..11932)
DNA (879bp) protein (293aa)
transglutaminase n=1 Tax=Rhizobium loti RepID=UPI00035CD969
Transglutaminase {ECO:0000313|EMBL:KKC32219.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2389_21
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12100..14511)
DNA (2412bp) protein (804aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I5_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKB11899.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2389_22
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14524..16116)
DNA (1593bp) protein (531aa)
IMP dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003605BB7
Large protein containing transglutaminase-like domain protein {ECO:0000313|EMBL:KFC62534.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devos
large protein containing transglutaminase-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_2389_23

Not on your lists

16460..17824
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AEI4_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD60036.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_300_bf_scaffold_2389_24
unknown

Not on your lists

17938..18120
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2389_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18087..18380
DNA (294bp) protein (98aa)
UPI0003CDFD72 related cluster n=1 Tax=unknown RepID=UPI0003CDFD72
Uncharacterized protein {ECO:0000313|EMBL:CDX16655.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pluri
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2389_26
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18384..20651)
DNA (2268bp) protein (756aa)
FGGY-family pentulose kinase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BS3_MESSB
Ribulokinase {ECO:0000313|EMBL:KKB84233.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
FGGY-family pentulose kinase
SCNpilot_cont_300_bf_scaffold_2389_27
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20675..22228)
DNA (1554bp) protein (518aa)
Mannitol 2-dehydrogenase n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GJ21_9RHIZ
Mannitol dehydrogenase {ECO:0000313|EMBL:KKC36562.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudin
mannitol-1-phosphate/altronate dehydrogenase
SCNpilot_cont_300_bf_scaffold_2389_28
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22240..23247)
DNA (1008bp) protein (336aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ39_9RHIZ rbh
Glycerol-3-phosphate ABC transporter ATPase {ECO:0000313|EMBL:KKB81201.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devos
ABC transporter
SCNpilot_cont_300_bf_scaffold_2389_29
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23259..23423)
DNA (165bp) protein (55aa)
Binding-protein-dependent transporters inner membrane component n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2M908_9PROT
mannitol ABC transporter permease
Binding-protein-dependent transporters inner membrane component {ECO:0000313|EMBL:EKF08698.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae
Displaying 29 items

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