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SCNpilot_cont_300_bf_scaffold_2450

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2450_1
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(418..1920)
DNA (1503bp) protein (501aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.-
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB0_PELHB
aspartyl-tRNA amidotransferase subunit B
SCNpilot_cont_300_bf_scaffold_2450_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1917..2405)
DNA (489bp) protein (163aa)
Acetyltransferase n=1 Tax=Rhizobium sp. CF122 RepID=J3BNA4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB82860.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
putative acetyltransferase
SCNpilot_cont_300_bf_scaffold_2450_3
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2410..2925)
DNA (516bp) protein (172aa)
GCN5-related N-acetyltransferase n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6DXS1_SINMK
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CDP52597.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB
N-acetyltransferase GCN5
SCNpilot_cont_300_bf_scaffold_2450_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2925..3236)
DNA (312bp) protein (104aa)
Isochorismate pyruvate-lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB2_PELHB
Chorismate mutase {ECO:0000313|EMBL:KFL28537.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
isochorismate pyruvate-lyase
SCNpilot_cont_300_bf_scaffold_2450_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3382..3807
DNA (426bp) protein (142aa)
UPI0003CDD481 related cluster n=1 Tax=unknown RepID=UPI0003CDD481
Uncharacterized protein {ECO:0000313|EMBL:KFL28538.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
cytochrome C
SCNpilot_cont_300_bf_scaffold_2450_6
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4027..4284
DNA (258bp) protein (86aa)
UPF0386 protein KKY_1594 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBB3_PELHB
hypothetical protein
UPF0386 protein KKY_1594 {ECO:0000256|HAMAP-Rule:MF_00827}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacte
SCNpilot_cont_300_bf_scaffold_2450_7
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4345..5364)
DNA (1020bp) protein (340aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HA
Lon protease n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAH2_PELHB
ATP-dependent protease La type I
SCNpilot_cont_300_bf_scaffold_2450_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5369..6841
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UYT1_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ENN85911.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2450_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6914..7630)
DNA (717bp) protein (239aa)
Citrate synthase (Si) {ECO:0000313|EMBL:CDP53661.1}; EC=2.3.3.1 {ECO:0000313|EMBL:CDP53661.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; De
Citrate synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UWE7_VARPE
citrate synthase
SCNpilot_cont_300_bf_scaffold_2450_10
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7759..7971)
DNA (213bp) protein (71aa)
gltA2; citrate synthase (EC:2.3.3.1)
Citrate synthase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q0M0_RHIE6
Citrate synthase {ECO:0000313|EMBL:KGE00576.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhi
SCNpilot_cont_300_bf_scaffold_2450_11
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8047..9033
DNA (987bp) protein (329aa)
Citrate synthase n=1 Tax=Rhizobium sp. CF080 RepID=J2K4W4_9RHIZ
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
citA; Citrate synthase II CitA
SCNpilot_cont_300_bf_scaffold_2450_12
unknown

Not on your lists

comp(9156..9380)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2450_13
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9974..11014)
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI00037E1B2D
Uncharacterized protein {ECO:0000313|EMBL:KFL31801.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
NAD-dependent epimerase/dehydratase family protein
SCNpilot_cont_300_bf_scaffold_2450_14
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11137..11559)
DNA (423bp) protein (141aa)
50S ribosomal protein L17 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC14_PELHB
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosi
50S ribosomal protein L17
SCNpilot_cont_300_bf_scaffold_2450_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11615..12634)
DNA (1020bp) protein (340aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC15_PELHB
DNA-directed RNA polymerase subunit alpha
SCNpilot_cont_300_bf_scaffold_2450_16
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12738..13130)
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC16_PELHB
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001
30S ribosomal protein S11
SCNpilot_cont_300_bf_scaffold_2450_17
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13228..13596)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC17_PELHB
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;
30S ribosomal protein S13
SCNpilot_cont_300_bf_scaffold_2450_18
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13783..14352)
DNA (570bp) protein (190aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC18_PELHB
adenylate kinase
SCNpilot_cont_300_bf_scaffold_2450_19
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14349..15683)
DNA (1335bp) protein (445aa)
Protein translocase subunit SecY n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC19_PELHB
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
preprotein translocase secY subunit
SCNpilot_cont_300_bf_scaffold_2450_20
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15761..16201)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC20_PELHB
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
50S ribosomal protein L15
SCNpilot_cont_300_bf_scaffold_2450_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16214..16402)
DNA (189bp) protein (63aa)
LSU ribosomal protein L30p (L7e) n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RTW3_9RHIZ
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosi
rpmD; 50S ribosomal protein L30
SCNpilot_cont_300_bf_scaffold_2450_22
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16395..16883)
DNA (489bp) protein (163aa)
30S ribosomal protein S5 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC22_PELHB
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;
30S ribosomal protein S5
SCNpilot_cont_300_bf_scaffold_2450_23
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16906..17205)
DNA (300bp) protein (100aa)
50S ribosomal protein L18 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC23_PELHB
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;
50S ribosomal protein L18
SCNpilot_cont_300_bf_scaffold_2450_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17218..17751)
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC24_PELHB
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
50S ribosomal protein L6
SCNpilot_cont_300_bf_scaffold_2450_25
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17850..18248)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC25_PELHB
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-
30S ribosomal protein S8
SCNpilot_cont_300_bf_scaffold_2450_26
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18261..18566)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC26_PELHB
30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001
SCNpilot_cont_300_bf_scaffold_2450_27
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18587..19144)
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC27_PELHB rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
50S ribosomal protein L5
SCNpilot_cont_300_bf_scaffold_2450_28
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19137..19451)
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC28_PELHB
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001
50S ribosomal protein L24
SCNpilot_cont_300_bf_scaffold_2450_29
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19451..19690)
DNA (240bp) protein (80aa)
50S ribosomal protein L14 n=1 Tax=Kaistia granuli RepID=UPI00036CBF49
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia
rplN; ribosomal protein L14
Displaying 29 items

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