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SCNpilot_cont_300_bf_scaffold_313

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_313_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1408
DNA (1407bp) protein (469aa)
hypothetical protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI0002631069
Putative permease {ECO:0000313|EMBL:EJL72177.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovora
SCNpilot_cont_300_bf_scaffold_313_2
unknown

Not on your lists

1408..2109
DNA (702bp) protein (234aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_313_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2387..2638
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI0003803160
Uncharacterized protein {ECO:0000313|EMBL:EJL68946.1}; Flags: Precursor; Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
SCNpilot_cont_300_bf_scaffold_313_4
Sphingomonas elodea, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2587..3183
DNA (597bp) protein (199aa)
hypothetical protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI0002631069
SCNpilot_cont_300_bf_scaffold_313_5
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3309..3974
DNA (666bp) protein (222aa)
YD repeat-containing protein n=1 Tax=Paenibacillus alvei A6-6i-x RepID=S9T747_PAEAL
YD repeat-containing protein {ECO:0000313|EMBL:EPY12854.1}; TaxID=1117109 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei A6-6i-x.;"
rhsI; Rhs core protein with extension
SCNpilot_cont_300_bf_scaffold_313_6
unknown

Not on your lists

3976..4374
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_313_7
unknown

Not on your lists

4582..5049
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_313_8
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5422..6684
DNA (1263bp) protein (421aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEB9
Putative integrase {ECO:0000313|EMBL:EIM67056.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B
putative integrase
SCNpilot_cont_300_bf_scaffold_313_9
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6726..7319
DNA (594bp) protein (198aa)
Protein tyrosine phosphatase-like protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T7J0_CAUSK
protein tyrosine phosphatase-like protein
Protein tyrosine phosphatase-like protein {ECO:0000313|EMBL:ABZ69728.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="
SCNpilot_cont_300_bf_scaffold_313_10
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7358..7558)
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003748E71
DNA binding domain, excisionase family {ECO:0000313|EMBL:KEQ53251.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
hypothetical protein
SCNpilot_cont_300_bf_scaffold_313_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7555..7767)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH63_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO37858.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
protein involved in integration/excision of ICE Tn4371 family
SCNpilot_cont_300_bf_scaffold_313_12
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7769..8992)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B162B rbh
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10 Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
conjugal transfer protein TrbI
SCNpilot_cont_300_bf_scaffold_313_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8989..9933)
DNA (945bp) protein (315aa)
Conjugal transfer protein TrbG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA3_9SPHN rbh
conjugal transfer protein TrbG
Conjugal transfer protein TrbG {ECO:0000313|EMBL:BAK67273.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobi
SCNpilot_cont_300_bf_scaffold_313_14
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9930..10736)
DNA (807bp) protein (269aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA4_9SPHN
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
conjugal transfer protein TrbF
SCNpilot_cont_300_bf_scaffold_313_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10736..12040)
DNA (1305bp) protein (435aa)
Conjugal transfer protein TrbL n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA5_9SPHN rbh
conjugal transfer protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:BAK67275.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobi
SCNpilot_cont_300_bf_scaffold_313_16
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12154..12894)
DNA (741bp) protein (247aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingobium indicum B90A RepID=I5BBU7_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KEZ00176.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
conjugal transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_313_17
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12900..15338)
DNA (2439bp) protein (813aa)
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D4A75 rbh
conjugal transfer protein TrbE
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_313_18
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15332..15604)
DNA (273bp) protein (91aa)
conjugal transfer protein TrbD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003703556
Putative conjugal transfer trbd transmembrane protein {ECO:0000313|EMBL:EZP83120.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphin
Conjugal transfer protein
SCNpilot_cont_300_bf_scaffold_313_19
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15601..15927)
DNA (327bp) protein (109aa)
UPI0003CF20CD related cluster n=1 Tax=unknown RepID=UPI0003CF20CD
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ESY89567.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizob
conjugal transfer protein TrbC
SCNpilot_cont_300_bf_scaffold_313_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15930..16916)
DNA (987bp) protein (329aa)
conjugal transfer protein TrbB n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC6
Conjugal transfer protein TrbB {ECO:0000313|EMBL:ENY82800.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingo
conjugal transfer protein TrbB
SCNpilot_cont_300_bf_scaffold_313_21
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16913..17314)
DNA (402bp) protein (134aa)
CopG family transcriptional regulator n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000361792D
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32925.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
Helix-turn-helix protein, CopG
SCNpilot_cont_300_bf_scaffold_313_22
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17316..19340)
DNA (2025bp) protein (675aa)
Conjugal transfer coupling protein TraG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H9_9SPHN
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:ENY82802.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source
conjugal transfer protein TraG
SCNpilot_cont_300_bf_scaffold_313_23
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(19867..20877)
DNA (1011bp) protein (337aa)
Ricin B lectin n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UZ82_TERSS rbh
ricin B lectin
Ricin B lectin {ECO:0000313|EMBL:ADV82100.1}; Flags: Precursor;; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strai
SCNpilot_cont_300_bf_scaffold_313_24
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20915..22411)
DNA (1497bp) protein (499aa)
Glycosyl hydrolases family 28 n=1 Tax=Caulobacter sp. AP07 RepID=J2QCU6_9CAUL rbh
Glycosyl hydrolases family 28 {ECO:0000313|EMBL:EJL37952.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;"
endo-polygalacturonase
SCNpilot_cont_300_bf_scaffold_313_25
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22481..25384)
DNA (2904bp) protein (968aa)
TonB-dependent receptor n=1 Tax=Caulobacter sp. AP07 RepID=J2HQ29_9CAUL rbh
TonB-dependent receptor {ECO:0000313|EMBL:EJL37953.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_313_26
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25545..26465)
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I377_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB19767.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
ROK family protein
SCNpilot_cont_300_bf_scaffold_313_27
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26593..28341
DNA (1749bp) protein (583aa)
Beta-xylosidase n=1 Tax=Caulobacter sp. AP07 RepID=J3A514_9CAUL rbh
Beta-xylosidase {ECO:0000313|EMBL:EJL26114.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulob
glycoside hydrolase
SCNpilot_cont_300_bf_scaffold_313_28
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28348..29436)
DNA (1089bp) protein (363aa)
Transcriptional regulator, LacI family n=1 Tax=Cellvibrio sp. BR RepID=I3I4I7_9GAMM rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EIK42972.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cel
bacterial regulatory s, lacI family protein
SCNpilot_cont_300_bf_scaffold_313_29
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29691..30992
DNA (1302bp) protein (434aa)
Oligosaccharide:H+ symporter n=1 Tax=Caulobacter sp. AP07 RepID=J3A509_9CAUL rbh
Oligosaccharide:H+ symporter {ECO:0000313|EMBL:EJL26109.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" s
lacY; lactose permease
SCNpilot_cont_300_bf_scaffold_313_30
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31000..32184
DNA (1185bp) protein (395aa)
Glycosyl Hydrolase Family 88 n=1 Tax=Caulobacter sp. AP07 RepID=J2G8P0_9CAUL rbh
Glycosyl Hydrolase Family 88 {ECO:0000313|EMBL:EJL26110.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter
glycosyl hydrolase family protein
Displaying items 1-30 of 75 in total

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