ggKbase home page

SCNpilot_cont_300_bf_scaffold_1461

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1461_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..646)
DNA (645bp) protein (215aa)
amidase-like protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Amidase-related protein id=1997013 bin=GWD2_Deltaproteobacteria_55_8 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
amidase-like protein
SCNpilot_cont_300_bf_scaffold_1461_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(721..3900)
DNA (3180bp) protein (1060aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8SF22_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71380.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
SCNpilot_cont_300_bf_scaffold_1461_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4078..4371)
DNA (294bp) protein (98aa)
anti-FecI sigma factor FecR n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037A4104
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:EJL36099.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source=
anti-FecI sigma factor FecR
SCNpilot_cont_300_bf_scaffold_1461_4
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4905..5522)
DNA (618bp) protein (206aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Caulobacter sp. AP07 RepID=J2HK75_9CAUL
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJL36098.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" sour
RNA polymerase sigma-24 factor
SCNpilot_cont_300_bf_scaffold_1461_5
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5759..6397)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VF48_CAUST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG09466.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis
SCNpilot_cont_300_bf_scaffold_1461_6
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6479..6706)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003794D79
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ73529.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (s
SCNpilot_cont_300_bf_scaffold_1461_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6767..7768)
DNA (1002bp) protein (334aa)
cobalt chelatase small subunit (EC:6.6.1.2)
Cobalt chelatase, pCobS small subunit {ECO:0000313|EMBL:ABZ69844.1}; EC=6.6.1.2 {ECO:0000313|EMBL:ABZ69844.1};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Ca
Cobalt chelatase, pCobS small subunit n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T8E3_CAUSK rbh
SCNpilot_cont_300_bf_scaffold_1461_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8046..8789
DNA (744bp) protein (248aa)
Phosphoesterase PA-phosphatase related n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T8E5_CAUSK
PA-phosphatase-like phosphoesterase
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:ABZ69846.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Cauloba
SCNpilot_cont_300_bf_scaffold_1461_9
unknown

Not on your lists

comp(8799..9701)
DNA (903bp) protein (301aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1461_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(9773..11107)
DNA (1335bp) protein (445aa)
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020Z3_SOLUE rbh
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein {ECO:0000313|EMBL:ABJ84496.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales;
SCNpilot_cont_300_bf_scaffold_1461_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11208..11876)
DNA (669bp) protein (223aa)
Molecular chaperones (DnaJ family) n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H333_CAUCN
DnaJ domain protein
DnaJ-related protein {ECO:0000313|EMBL:AAK24972.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentu
SCNpilot_cont_300_bf_scaffold_1461_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11925..12200
DNA (276bp) protein (92aa)
Stress-induced morphogen n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG27_PHEZH
stress-induced morphogen
Stress-induced morphogen {ECO:0000313|EMBL:ACG77151.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacte
SCNpilot_cont_300_bf_scaffold_1461_13
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12338..13558)
DNA (1221bp) protein (407aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A84A8
RNA polymerase ECF-subfamily sigma factor
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_1461_14
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13643..14074)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW95_9RHIZ
DGPFAETKE family protein {ECO:0000313|EMBL:KGB51720.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1461_15
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14170..14547)
DNA (378bp) protein (126aa)
Two-component receiver domain protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H338_CAUCN
two-component receiver domain protein
Response regulator {ECO:0000313|EMBL:AAK24977.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus
SCNpilot_cont_300_bf_scaffold_1461_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14544..15794)
DNA (1251bp) protein (417aa)
Signal transduction histidine kinase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VN23_CAUST rbh
signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:ADG11896.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulo
SCNpilot_cont_300_bf_scaffold_1461_17
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15869..17104)
DNA (1236bp) protein (412aa)
Putative Mg2+ and Co2+ transporter CorB n=1 Tax=Caulobacter sp. AP07 RepID=J3APQ4_9CAUL rbh
Putative Mg2+ and Co2+ transporter CorB {ECO:0000313|EMBL:EJL34789.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulo
magnesium and cobalt efflux protein corB
SCNpilot_cont_300_bf_scaffold_1461_18
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17101..18219)
DNA (1119bp) protein (373aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1144304 species="Bacteri
3-dehydroquinate synthase n=1 Tax=Caulobacter sp. AP07 RepID=J2Q3Q3_9CAUL rbh
aroB; 3-dehydroquinate synthase rbh
SCNpilot_cont_300_bf_scaffold_1461_19
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18216..18761)
DNA (546bp) protein (182aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=450851 species="Bacteria; Proteobacteria; Alphapr
Shikimate kinase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RG34_PHEZH
shikimate kinase
SCNpilot_cont_300_bf_scaffold_1461_20
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18875..20263
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GWF4_9CAUL rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL34785.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1461_21
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20978..21160
DNA (183bp) protein (61aa)
Tyrosine recombinase XerD n=1 Tax=Caulobacter sp. AP07 RepID=J3APQ1_9CAUL
integrase/recombinase DNA recombination protein; K04763 integrase/recombinase XerD Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
integrase family protein
SCNpilot_cont_300_bf_scaffold_1461_22
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21173..21463
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IFW5_PHYMF
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1461_23
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21534..21881
DNA (348bp) protein (116aa)
Hypotheical conserved protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YUK7_9CAUL
Hypotheical conserved protein {ECO:0000313|EMBL:GAD59171.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundim
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1461_24
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21893..22282)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0CZ42_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ81691.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresc
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1461_25
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22416..24389)
DNA (1974bp) protein (658aa)
RNA polymerase sigma factor RpoD n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003720ABA rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; C
RNA polymerase sigma factor RpoD rbh
SCNpilot_cont_300_bf_scaffold_1461_26
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24735..25253)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000367D8DA
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32404.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
6-phosphogluconate dehydrogenase NAD-binding protein
SCNpilot_cont_300_bf_scaffold_1461_27
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25597..27498)
DNA (1902bp) protein (634aa)
dnaG; DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=190650 species="Bacteria; Proteobacter
DNA primase n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H372_CAUCN rbh
SCNpilot_cont_300_bf_scaffold_1461_28
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27678..28490
DNA (813bp) protein (271aa)
Transport-associated protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VN95_CAUST
transport-associated protein
Transport-associated protein {ECO:0000313|EMBL:ADG11968.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter s
SCNpilot_cont_300_bf_scaffold_1461_29
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28627..29163
DNA (537bp) protein (179aa)
Transport-associated protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VN95_CAUST
transport-associated protein
Transport-associated protein {ECO:0000313|EMBL:ADG11968.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter s
SCNpilot_cont_300_bf_scaffold_1461_30
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29164..29865)
DNA (702bp) protein (234aa)
Haloacid dehalogenase domain protein hydrolase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SX02_CAUSK rbh
hydrolase
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:ABZ70163.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" sou
Displaying items 1-30 of 32 in total

View Taxonomy