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SCNpilot_cont_300_bf_scaffold_2277

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2277_1
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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84..920
DNA (837bp) protein (279aa)
tktA; transketolase, N-terminal subunit (EC:2.2.1.1)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4P0M9_9CAUL
Transketolase {ECO:0000313|EMBL:KKB07067.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
SCNpilot_cont_300_bf_scaffold_2277_2
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

917..1849
DNA (933bp) protein (311aa)
putative transketolase, C-terminal subunit; K00615 transketolase [EC:2.2.1.1] id=12557127 bin=CNBR_ACIDO species=Patulibacter americanus genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
putative transketolase, C-terminal subunit; K00615 transketolase [EC:2.2.1.1] Tax=RBG_16_RIF_CHLX_70_13_curated
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
SCNpilot_cont_300_bf_scaffold_2277_3
Pseudomonas viridiflava, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1855..3357
DNA (1503bp) protein (501aa)
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] id=12557126 bin=CNBR_ACIDO species=Pseudomonas viridiflava genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
Strain LMCA8 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36760.1}; TaxID=33069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
glycerol kinase
SCNpilot_cont_300_bf_scaffold_2277_4
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3354..4307
DNA (954bp) protein (318aa)
DeoR family transcriptional regulator id=12557125 bin=CNBR_ACIDO species=Patulibacter americanus genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Probable transcriptional regulator protein {ECO:0000313|EMBL:EBA06136.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="S
putative transcriptional regulator, DeoR family
SCNpilot_cont_300_bf_scaffold_2277_5
Caldicellulosiruptor owensensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4304..4891
DNA (588bp) protein (196aa)
periplasmic lipoprotein id=12557124 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
periplasmic lipoprotein
Periplasmic lipoprotein {ECO:0000313|EMBL:ADQ03912.1}; TaxID=632518 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosi
SCNpilot_cont_300_bf_scaffold_2277_6
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4888..6399
DNA (1512bp) protein (504aa)
monosacharide ABC transporter ATP-binding protein (EC:3.6.3.-); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] id=12557123 bin=CNBR_ACIDO species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
sugar ABC transporter ATPase
ABC-type sugar transport system, ATPase component {ECO:0000313|EMBL:AGA57440.1}; TaxID=717605 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobaci
SCNpilot_cont_300_bf_scaffold_2277_7
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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6396..7403
DNA (1008bp) protein (336aa)
inner-membrane translocator; K10440 ribose transport system permease protein id=12557122 bin=CNBR_ACIDO species=Asticcacaulis sp. YBE204 genus=Asticcacaulis taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
inner-membrane translocator; K10440 ribose transport system permease protein Tax=GWF2_Verrucomicrobia_62_7_curated
sugar ABC transporter permease
SCNpilot_cont_300_bf_scaffold_2277_8
GWC1_Treponema_61_84_curated, Spirochaetes, Bacteria

Not on your lists

7415..8377
DNA (963bp) protein (321aa)
sugar ABC transporter substrate-binding protein id=12557121 bin=CNBR_ACIDO species=Cohnella laeviribosi genus=Cohnella taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
putative ribose ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein Tax=GWC1_Treponema_61_84_curated
Periplasmic binding protein domain containing protein
SCNpilot_cont_300_bf_scaffold_2277_9
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8410..8682
DNA (273bp) protein (91aa)
Xylose isomerase {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511}; EC=5.3.1.5 {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511};; TaxID=443610 species="Bacteria; Proteobacte
Xylose isomerase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F2U6_9RHIZ
xylose isomerase
SCNpilot_cont_300_bf_scaffold_2277_10
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8624..9352
DNA (729bp) protein (243aa)
putative xylose isomerase (EC:5.3.1.5)
Xylose isomerase {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511}; EC=5.3.1.5 {ECO:0000256|RuleBase:RU000609, ECO:0000256|SAAS:SAAS00108511};; TaxID=1313172 species="Bacteria; Actinobact
Xylose isomerase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A4W9_9ACTN
SCNpilot_cont_300_bf_scaffold_2277_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9355..10386)
DNA (1032bp) protein (344aa)
Sal operon transcriptional repressor n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MNK0_9SPHN
Sal operon transcriptional repressor {ECO:0000313|EMBL:CCW18299.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
LacI family transcription regulator
SCNpilot_cont_300_bf_scaffold_2277_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10598..11869
DNA (1272bp) protein (424aa)
protein of unknown function DUF1593 id=12557129 bin=CNBR_ACIDO species=Emticicia oligotrophica genus=Emticicia taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein of unknown function DUF1593
Uncharacterized protein {ECO:0000313|EMBL:AHG88959.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SCNpilot_cont_300_bf_scaffold_2277_13
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12088..14100
DNA (2013bp) protein (671aa)
TonB-dependent receptor domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WC02_9CAUL
TonB-dependent receptor {ECO:0000313|EMBL:KGB52164.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
TonB-dependent receptor-like protein
Displaying 13 items

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