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SCNpilot_cont_300_bf_scaffold_2619

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2619_1
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14..721)
DNA (708bp) protein (236aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7K9_NOVAD
Short-chain dehydrogenase {ECO:0000313|EMBL:KFG91045.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium h
short chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_2619_2
unknown

Not on your lists

comp(1228..2157)
DNA (930bp) protein (310aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2619_3
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2203..3459
DNA (1257bp) protein (419aa)
carbohydrate kinase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489B88
Carbohydrate kinase, FGGY {ECO:0000313|EMBL:KGB52160.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis
carbohydrate kinase FGGY
SCNpilot_cont_300_bf_scaffold_2619_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3552..4598
DNA (1047bp) protein (349aa)
lldD; L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3)
FMN-dependent dehydrogenase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WX72_9SPHN
LldD protein {ECO:0000313|EMBL:GAN14169.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis
SCNpilot_cont_300_bf_scaffold_2619_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4573..5316)
DNA (744bp) protein (248aa)
DeoR family transcripitonal regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B34A6F
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABD25493.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
SCNpilot_cont_300_bf_scaffold_2619_6
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5589..6872
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D672_SPHYA rbh
Major facilitator transporter {ECO:0000313|EMBL:KHL25528.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobac
major facilitator transporter
SCNpilot_cont_300_bf_scaffold_2619_7
Streptomyces olindensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6892..9498
DNA (2607bp) protein (869aa)
Alpha-L-rhamnosidase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EYD9_MODMB rbh
Hydrolase {ECO:0000313|EMBL:KDN73476.1}; TaxID=358823 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces olindensis.;"
alpha-L-rhamnosidase rbh
SCNpilot_cont_300_bf_scaffold_2619_8
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9482..9811)
DNA (330bp) protein (110aa)
L-rhamnose mutarotase {ECO:0000256|HAMAP-Rule:MF_01663, ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|HAMAP-Rule:MF_01663, ECO:0000256|SAAS:SAAS00169483};; Rhamnose 1-epimerase {ECO:0000256
L-rhamnose mutarotase n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QN17_BRESC
L-rhamnose 1-epimerase
SCNpilot_cont_300_bf_scaffold_2619_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9817..11196)
DNA (1380bp) protein (460aa)
RND transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC1F
RND transporter
RND transporter {ECO:0000313|EMBL:AIT05949.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_2619_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11183..12286)
DNA (1104bp) protein (368aa)
RND transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC20
Putative efflux pump periplasmic linker protein {ECO:0000313|EMBL:GAO37883.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;
RND family efflux transporter MFP subunit
SCNpilot_cont_300_bf_scaffold_2619_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12238..15489)
DNA (3252bp) protein (1084aa)
RND transporter n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289B24B
RND transporter {ECO:0000313|EMBL:AIT05951.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
RND transporter
SCNpilot_cont_300_bf_scaffold_2619_12
Sphingomonas sp. PAMC 26605, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15711..16433
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA65F
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2619_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(16452..17702)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00037FB228
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
NHL repeat-containing protein
SCNpilot_cont_300_bf_scaffold_2619_14
unknown

Not on your lists

comp(17838..18056)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2619_15
unknown

Not on your lists

comp(18074..18298)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2619_16
unknown

Not on your lists

18517..18882
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2619_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

18900..19652
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002EB3E06
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2619_18
Brassica napus, Brassica, Brassicales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(19675..20898)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Brassica rapa subsp. pekinensis RepID=M4D9Y9_BRARP
BnaA01g09100D protein {ECO:0000313|EMBL:CDX78843.1}; TaxID=3708 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pe
FMN-dependent alpha-hydroxy acid dehydrogenase
SCNpilot_cont_300_bf_scaffold_2619_19
Sorghum bicolor, Sorghum, Poales, commelinids, Streptophyta, Viridiplantae

Not on your lists

comp(20891..21997)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein Sb02g039250 n=1 Tax=Sorghum bicolor RepID=C5XE16_SORBI
Putative uncharacterized protein Sb02g039250 {ECO:0000313|EMBL:EER97538.1}; TaxID=4558 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliops
FMN-dependent alpha-hydroxy acid dehydrogenase
SCNpilot_cont_300_bf_scaffold_2619_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22261..22971
DNA (711bp) protein (237aa)
TonB-dependent siderophore receptor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAR4_VARPE
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33581.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
tonb-dependent siderophore receptor
SCNpilot_cont_300_bf_scaffold_2619_21
Herbaspirillum frisingense, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22929..24329
DNA (1401bp) protein (467aa)
Catecholate siderophore receptor Fiu n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0E9Z8_9BURK
Catecholate siderophore receptor Fiu {ECO:0000313|EMBL:EOA02546.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Her
fiu; ferrisiderophore receptor protein
SCNpilot_cont_300_bf_scaffold_2619_22
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24397..25071
DNA (675bp) protein (225aa)
PKHD-type hydroxylase HGR_07271 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
PKHD-type hydroxylase HGR_07271 n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KSM5_9BURK
Fe(II)-dependent oxygenase
SCNpilot_cont_300_bf_scaffold_2619_23
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25216..25983)
DNA (768bp) protein (256aa)
2,3-dihydroxybenzoate-2,3-dehydrogenase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QK00_BREDI rbh
2,3-dihydroxybenzoate-2,3-dehydrogenase {ECO:0000313|EMBL:EKY28276.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source=
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_2619_24
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25980..28106)
DNA (2127bp) protein (709aa)
AMP-binding enzyme n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QL38_BREDI rbh
AMP-binding enzyme {ECO:0000313|EMBL:EKY28277.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminu
entF; enterobactin synthase subunit F
Displaying 24 items

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