ggKbase home page

SCNpilot_cont_300_bf_scaffold_2700

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2700_1
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..288)
DNA (288bp) protein (96aa)
UPI0003D04C95 related cluster n=1 Tax=unknown RepID=UPI0003D04C95
Beta-lactamase {ECO:0000313|EMBL:ESZ86548.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H
beta-lactamase
SCNpilot_cont_300_bf_scaffold_2700_2
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(398..718)
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QJ47_BRESC
hypothetical protein; K09981 hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2700_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(885..1460)
DNA (576bp) protein (192aa)
PREDICTED: ribosomal protein S4, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C16725 rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter
SSU ribosomal protein S4P
SCNpilot_cont_300_bf_scaffold_2700_4
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2546..3001)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381DA2E
Uncharacterized protein {ECO:0000313|EMBL:KDB05826.1}; Flags: Precursor;; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source
putative membrane protein
SCNpilot_cont_300_bf_scaffold_2700_5
Asticcacaulis biprosthecium, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3113..4264
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00037425BF rbh
Glycosyl transferase family 2 family protein {ECO:0000313|EMBL:EGF90359.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" sou
glycosyl transferase family 2 rbh
SCNpilot_cont_300_bf_scaffold_2700_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4314..5831
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HG05_9BRAD rbh
4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:KJC33597.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="B
Alg9-like mannosyltransferase
SCNpilot_cont_300_bf_scaffold_2700_7
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5885..6238
DNA (354bp) protein (118aa)
UPI0003CF125A related cluster n=1 Tax=unknown RepID=UPI0003CF125A
DifB protein {ECO:0000313|EMBL:ESW91244.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2700_8
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6235..6678)
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:ESQ90260.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis b
SCNpilot_cont_300_bf_scaffold_2700_9
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6803..7111)
DNA (309bp) protein (103aa)
Transcriptional regulator n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PMU2_9CAUL
Transcriptional regulator {ECO:0000313|EMBL:ESQ88574.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2700_10
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

7269..8156
DNA (888bp) protein (296aa)
Conserved membrane protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4M7_9BACT
hypothetical protein
Conserved membrane protein {ECO:0000313|EMBL:ACE75594.1}; Uncharacterized protein {ECO:0000313|EMBL:CBK41187.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.
SCNpilot_cont_300_bf_scaffold_2700_11
unknown

Not on your lists

comp(8650..8928)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2700_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

9122..9745
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4M8_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK41188.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
SCNpilot_cont_300_bf_scaffold_2700_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9732..10856
DNA (1125bp) protein (375aa)
putative muconate cycloisomerase (EC:5.5.1.1) Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
putative muconate cycloisomerase (EC:5.5.1.1)
Putative Muconate cycloisomerase n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4M9_9BACT
SCNpilot_cont_300_bf_scaffold_2700_14
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10807..11406)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036FC28D
Uncharacterized protein {ECO:0000313|EMBL:AID31381.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huak
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2700_15
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11406..12182)
DNA (777bp) protein (259aa)
S-formylglutathione hydrolase (EC:3.1.2.12)
PREDICTED: S-formylglutathione hydrolase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14943 rbh
S-formylglutathione hydrolase {ECO:0000313|EMBL:ENZ81308.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter
SCNpilot_cont_300_bf_scaffold_2700_16
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12351..13397)
DNA (1047bp) protein (349aa)
adhC; alcohol dehydrogenase class III (EC:1.1.1.1 1.1.1.284)
S-(hydroxymethyl)glutathione dehydrogenase {ECO:0000256|RuleBase:RU362016}; EC=1.1.1.284 {ECO:0000256|RuleBase:RU362016};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
Alcohol dehydrogenase class III n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EP15_BRASB
SCNpilot_cont_300_bf_scaffold_2700_17
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13394..14104)
DNA (711bp) protein (237aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VFF6_CAUST rbh
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ADG09688.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Cauloba
SCNpilot_cont_300_bf_scaffold_2700_18
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14179..15192
DNA (1014bp) protein (338aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; TaxID=450851 species="Bacteria; Proteobacteri
Beta-lactamase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHE4_PHEZH rbh
beta-lactamase
SCNpilot_cont_300_bf_scaffold_2700_19
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15196..16326)
DNA (1131bp) protein (377aa)
Acyltransferase 3 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T1N6_CAUSK
acyltransferase 3
Acyltransferase 3 {ECO:0000313|EMBL:ABZ72225.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain
SCNpilot_cont_300_bf_scaffold_2700_20
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16500..17321
DNA (822bp) protein (274aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_0073
ribosomal protein L11 methyltransferase n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI0003703652 rbh
ribosomal L11 methyltransferase
SCNpilot_cont_300_bf_scaffold_2700_21
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17377..17814
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T1G6_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ70723.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (s
SCNpilot_cont_300_bf_scaffold_2700_22
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17899..19713
DNA (1815bp) protein (605aa)
metallopeptidase M24 family protein; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
Metallopeptidase M24 family protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFE7_PHEZH rbh
metallopeptidase M24 family protein
SCNpilot_cont_300_bf_scaffold_2700_23
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19922..20551)
DNA (630bp) protein (210aa)
Putative extracellular protein n=1 Tax=Burkholderia cenocepacia KC-01 RepID=V4ZWM8_9BURK
GlcG {ECO:0000313|EMBL:KHL08716.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2700_24
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20703..21512)
DNA (810bp) protein (270aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN51030.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas compost
SCNpilot_cont_300_bf_scaffold_2700_25
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21488..23818)
DNA (2331bp) protein (777aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {EC
NAD-dependent DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Caulobacter sp. AP07 RepID=J3AMG2_9CAUL rbh
SCNpilot_cont_300_bf_scaffold_2700_26
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23815..25482)
DNA (1668bp) protein (556aa)
DNA repair protein RecN n=1 Tax=Caulobacter sp. AP07 RepID=J2PZZ1_9CAUL rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales;
DNA repair protein RecN rbh
SCNpilot_cont_300_bf_scaffold_2700_27
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25534..26394)
DNA (861bp) protein (287aa)
Outer membrane protein assembly factor BamD n=1 Tax=Caulobacter crescentus OR37 RepID=R0E4M6_CAUCE rbh
outer membrane assembly lipoprotein YfiO; K05807 putative lipoprotein Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
outer membrane assembly lipoprotein YfiO
SCNpilot_cont_300_bf_scaffold_2700_28
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26405..27583)
DNA (1179bp) protein (393aa)
Transcriptional regulator n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H5P3_CAUCN rbh
MecR1 antirepressor protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK25470.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresce
Displaying 28 items

View Taxonomy