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SCNpilot_cont_300_bf_scaffold_1395

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1395_1
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32..607
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A21CA
Uncharacterized protein {ECO:0000313|EMBL:KGF67665.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1395_2
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(624..1184)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000382A116
SCO1/SenC superfamily {ECO:0000313|EMBL:EEE47825.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (
inner mitochondrial membrane protein Sco1p
SCNpilot_cont_300_bf_scaffold_1395_3
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1246..1581)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364E423
Uncharacterized protein {ECO:0000313|EMBL:KKB81953.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
DoxX family protein
SCNpilot_cont_300_bf_scaffold_1395_4
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1637..3559)
DNA (1923bp) protein (641aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Kaistia granuli RepID=UPI00037F3259 rbh
dxs; 1-deoxy-D-xylulose-5-phosphate synthase
SCNpilot_cont_300_bf_scaffold_1395_5
unknown

Not on your lists

3800..3961
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1395_6
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3952..4587)
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GYW6_CAUCN
TetR-family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AAK24310.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Cau
SCNpilot_cont_300_bf_scaffold_1395_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4584..5390)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Loktanella vestfoldensis RepID=UPI00037B3209
short-chain dehydrogenase/reductase SDR
Uncharacterized protein {ECO:0000313|EMBL:EKS36761.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
SCNpilot_cont_300_bf_scaffold_1395_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5470..6315
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB04_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36760.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1395_9
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6338..7234)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003453F34 rbh
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AJC44837.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanth
SCNpilot_cont_300_bf_scaffold_1395_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7334..8902
DNA (1569bp) protein (523aa)
NADH Dehydrogenase Protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JZ99_AGRVS
NADH Dehydrogenase Protein
NADH Dehydrogenase Protein {ECO:0000313|EMBL:ACM35211.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;
SCNpilot_cont_300_bf_scaffold_1395_11
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

8920..11361
DNA (2442bp) protein (814aa)
UPF0753 protein RoseRS_3853 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=Y3853_ROSS1 rbh
hypothetical protein
UPF0753 protein RoseRS_3853 {ECO:0000255|HAMAP-Rule:MF_01871}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseifl
SCNpilot_cont_300_bf_scaffold_1395_12
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11478..12254
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003817AFB
cobalt ABC transporter periplasmic binding protein CbiN
ABC cobalt transporter, periplasmic binding protein CbiN {ECO:0000313|EMBL:ADZ69874.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (
SCNpilot_cont_300_bf_scaffold_1395_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12274..12888
DNA (615bp) protein (205aa)
Cobalt transporter CbiM n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J366_POLGS
cobalt transporter CbiM
Cobalt transporter CbiM {ECO:0000313|EMBL:ADZ69873.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 /
SCNpilot_cont_300_bf_scaffold_1395_14
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12885..13451
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035F9567
Cobalamin biosynthesis protein CbiL {ECO:0000313|EMBL:KFI24862.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="
CbiL protein
SCNpilot_cont_300_bf_scaffold_1395_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13448..14161
DNA (714bp) protein (238aa)
ABC-type cobalt transport system permease component CbiQ and related transporter-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J364_POLGS
cbiQ; cobalt ABC transporter permease
ABC-type cobalt transport system permease component CbiQ and related transporter-like protein {ECO:0000313|EMBL:ADZ69871.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymo
SCNpilot_cont_300_bf_scaffold_1395_16
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14158..14991
DNA (834bp) protein (278aa)
ABC cobalt transporter, ATPase subunit, CbiO n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J363_POLGS
cbiO; cobalt ABC transporter ATPase CbiO
ABC cobalt transporter, ATPase subunit, CbiO {ECO:0000313|EMBL:ADZ69870.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 2
SCNpilot_cont_300_bf_scaffold_1395_17
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14822..16126)
DNA (1305bp) protein (435aa)
Porin n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0M6_STAND
porin
Porin {ECO:0000313|EMBL:ADH91347.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strai
SCNpilot_cont_300_bf_scaffold_1395_18
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16162..17091)
DNA (930bp) protein (310aa)
LysR family transcriptional regulator n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI00035F62C6
LysR family transcriptional regulator {ECO:0000313|EMBL:EGX59384.1}; TaxID=700597 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresi
LysR-family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1395_19
Gordonia sp. no. 9, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17415..19346
DNA (1932bp) protein (644aa)
Putative membrane protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZZ8_BORA1
Uncharacterized protein {ECO:0000313|EMBL:KJR08099.1}; TaxID=1617449 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia sp. no. 9.;"
membrane protein
SCNpilot_cont_300_bf_scaffold_1395_20
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19381..20700
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037DC00E
YidE/YbjL duplication {ECO:0000313|EMBL:EKS66952.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ9
YidE/YbjL duplication
SCNpilot_cont_300_bf_scaffold_1395_21
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20731..21489
DNA (759bp) protein (253aa)
Ammonium transporter n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1Z8R6_METPB
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" sour
SCNpilot_cont_300_bf_scaffold_1395_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21704..22204)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILS8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68971.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrop
SCNpilot_cont_300_bf_scaffold_1395_23
Mycobacterium rufum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22277..22678)
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1TE03_MYCVP
Uncharacterized protein {ECO:0000313|EMBL:KGI69488.1}; TaxID=318424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rufum.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1395_24
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(22675..23085)
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Thauera RepID=C4ZNQ7_THASP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIY14620.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_cont_300_bf_scaffold_1395_25
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23166..23909)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035E1C1B
Putative gamma-carboxymuconolactone decarboxylase subunit {ECO:0000313|EMBL:EKZ95703.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriav
carboxymuconolactone decarboxylase
SCNpilot_cont_300_bf_scaffold_1395_26
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(23941..24246)
DNA (306bp) protein (102aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMK8_ROSCS
putative rieske-type ferredoxin; K05710 dioxygenase ferredoxin subunit Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
Rieske (2Fe-2S) domain-containing protein
SCNpilot_cont_300_bf_scaffold_1395_27
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24272..24661)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FB111D
Uncharacterized protein {ECO:0000313|EMBL:KGT79196.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japoni
lactoylglutathione lyase family protein
SCNpilot_cont_300_bf_scaffold_1395_28
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24738..25907)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037B5A08 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKZ95701.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HM
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1395_29
unknown

Not on your lists

comp(26031..26219)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1395_30
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26549..28303
DNA (1755bp) protein (585aa)
UPI0003CFF7B6 related cluster n=1 Tax=unknown RepID=UPI0003CFF7B6 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ12451.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
Displaying items 1-30 of 35 in total

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