ggKbase home page

SCNpilot_cont_300_bf_scaffold_2053

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2053_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..707)
DNA (705bp) protein (235aa)
yfdE; L-carnitine dehydratase/bile acid-inducible protein F Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
L-carnitine dehydratase/bile acid-inducible protein F id=4327969 bin=GWA2_Methylomirabilis_73_35 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formyl-CoA transferase
SCNpilot_cont_300_bf_scaffold_2053_2
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(754..1737)
DNA (984bp) protein (328aa)
Uncharacterized protein upf0065 n=2 Tax=Bordetella bronchiseptica RepID=K4T889_BORBO
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:KDD64722.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;"
bugT; ABC transporter substrate-binding protein
SCNpilot_cont_300_bf_scaffold_2053_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1775..3010)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IUM5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF86594.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_2053_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3209..3976)
DNA (768bp) protein (256aa)
Transcriptional regulator, IclR family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y444_RAMTT
Uncharacterized protein {ECO:0000313|EMBL:KHK88979.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
IclR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2053_5
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4158..5426)
DNA (1269bp) protein (423aa)
Putative zinc protease (Mpp-like) n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z3Y6_AZOL4 rbh
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
putative zinc protease (mpp-like)
SCNpilot_cont_300_bf_scaffold_2053_6
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5423..6865)
DNA (1443bp) protein (481aa)
Threonine synthase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LVZ3_9PROT rbh
thrC; threonine synthase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
thrC; threonine synthase
SCNpilot_cont_300_bf_scaffold_2053_7
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6939..7190)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RH43_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG78991.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacter
SCNpilot_cont_300_bf_scaffold_2053_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7200..8714)
DNA (1515bp) protein (505aa)
carboxypeptidase Taq (EC:3.4.17.19); K01299 carboxypeptidase Taq [EC:3.4.17.19] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Carboxypeptidase Taq n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZI43_METPB
peptidase M32
SCNpilot_cont_300_bf_scaffold_2053_9
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8725..9411)
DNA (687bp) protein (229aa)
SURF1 family protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XYM4_9PROT
surfeit locus 1 family protein; K14998 surfeit locus 1 family protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SURF1 family protein
SCNpilot_cont_300_bf_scaffold_2053_10
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9422..9808)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364E697
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2053_11
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9875..10753)
DNA (879bp) protein (293aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PREDICTED: cytochrome c oxidase subunit 3-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15572
ctaE; cytochrome-c oxidase, subunit III protein
SCNpilot_cont_300_bf_scaffold_2053_12
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10750..11355)
DNA (606bp) protein (202aa)
cytochrome C oxidase assembly protein n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B3BE83
coxG; cytochrome c oxidase assembly protein; K02258 cytochrome c oxidase assembly protein subunit 11 Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
cytochrome C oxidase assembly protein
SCNpilot_cont_300_bf_scaffold_2053_13
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11352..11492)
DNA (141bp) protein (47aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCNpilot_cont_300_bf_scaffold_2053_14
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11662..12360)
DNA (699bp) protein (233aa)
coxE; protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Protoheme IX farnesyltransferase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TIJ9_9PROT
coxE; protoheme IX farnesyltransferase
SCNpilot_cont_300_bf_scaffold_2053_15
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12432..14060)
DNA (1629bp) protein (543aa)
cytochrome-c oxidase subunit I protein (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
cytochrome-c oxidase subunit I protein (EC:1.9.3.1)
cytochrome C oxidase subunit I n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4F684 rbh
SCNpilot_cont_300_bf_scaffold_2053_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14085..14951)
DNA (867bp) protein (289aa)
ctaC; Cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ctaC; Cytochrome c oxidase subunit II (EC:1.9.3.1)
Cytochrome c oxidase subunit 2 n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IXF5_RHOCS
SCNpilot_cont_300_bf_scaffold_2053_17
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15469..16014
DNA (546bp) protein (182aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8APZ5_AZOBR
ppiB; peptidyl prolyl cis-trans isomerase (rotamase B) Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
ppiB; peptidyl prolyl cis-trans isomerase (rotamase B)
SCNpilot_cont_300_bf_scaffold_2053_18
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16230..16610)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPA2_9BURK
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2053_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16647..17636)
DNA (990bp) protein (330aa)
zinc-binding dehydrogenase family oxidoreductase; K00344 NADPH2:quinone reductase [EC:1.6.5.5] Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
alcohol dehydrogenase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B68F9B rbh
zinc-binding dehydrogenase oxidoreductase
SCNpilot_cont_300_bf_scaffold_2053_20
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17750..19216
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037BBBA9
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2053_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19221..20153
DNA (933bp) protein (311aa)
Uncharacterized protein n=2 Tax=Thauera RepID=C4KD52_THASP
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2053_22
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20163..20972
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00037CFF61
transglutaminase domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
transglutaminase
Displaying 22 items

View Taxonomy