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SCNpilot_cont_300_bf_scaffold_3378

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3378_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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59..367
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=18 Tax=Rhizobiaceae RepID=RS10_RHIME
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
SCNpilot_cont_300_bf_scaffold_3378_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(531..929)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8K5_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP56651.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Ag
SCNpilot_cont_300_bf_scaffold_3378_3
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1124..1747
DNA (624bp) protein (208aa)
50S ribosomal protein L4 n=2 Tax=Agrobacterium RepID=F0L752_AGRSH
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;"
rplD; 50S ribosomal protein L4
SCNpilot_cont_300_bf_scaffold_3378_4
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1744..2037
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Rhizobium sp. CF122 RepID=J2JCL2_9RHIZ
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;
rplW; 50S ribosomal protein L23
SCNpilot_cont_300_bf_scaffold_3378_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2049..2885
DNA (837bp) protein (279aa)
50S ribosomal protein L2 n=1 Tax=Rhizobium sp. (strain NGR234) RepID=RL2_RHISN rbh
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" sour
SCNpilot_cont_300_bf_scaffold_3378_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2901..3179
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Rhizobium sp. RepID=L0NEJ1_RHISP
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" so
SCNpilot_cont_300_bf_scaffold_3378_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3182..3571
DNA (390bp) protein (130aa)
50S ribosomal protein L22 n=8 Tax=Rhizobium meliloti RepID=RL22_RHIME
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobiu
rplV; 50S ribosomal protein L22
SCNpilot_cont_300_bf_scaffold_3378_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3571..4299
DNA (729bp) protein (243aa)
30S ribosomal protein S3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV35_9RHIZ rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;"
30S ribosomal protein S3
SCNpilot_cont_300_bf_scaffold_3378_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4338..4751
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=11 Tax=Rhizobium RepID=RL16_RHIE6
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/A
SCNpilot_cont_300_bf_scaffold_3378_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4763..4963
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1G8_9RHIZ
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;"
SCNpilot_cont_300_bf_scaffold_3378_11
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4979..5215
DNA (237bp) protein (79aa)
30S ribosomal protein S17 n=2 Tax=Agrobacterium RepID=RS17_AGRT5
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacteri
rpsQ; 30S ribosomal protein S17
SCNpilot_cont_300_bf_scaffold_3378_12
Brucella melitensis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5551..5883
DNA (333bp) protein (111aa)
50S ribosomal protein L14 n=1 Tax=Rhizobium giardinii RepID=UPI000369A688
rplN; 50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=224914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;"
SCNpilot_cont_300_bf_scaffold_3378_13
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5899..6207
DNA (309bp) protein (103aa)
50S ribosomal protein L24 n=1 Tax=Rhizobium mongolense RepID=UPI0003B4B8F3
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;
SCNpilot_cont_300_bf_scaffold_3378_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6200..6757
DNA (558bp) protein (186aa)
50S ribosomal protein L5 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UYX1_9RHIZ
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;"
rplE; 50S ribosomal protein L5
SCNpilot_cont_300_bf_scaffold_3378_15
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6790..7095
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=4 Tax=Agrobacterium RepID=RS14_AGRT5
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacteri
SCNpilot_cont_300_bf_scaffold_3378_16
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7107..7502
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1Z6_9RHIZ
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;"
30S ribosomal protein S8
SCNpilot_cont_300_bf_scaffold_3378_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7545..8078
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=2 Tax=Agrobacterium RepID=RL6_AGRT5 rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agroba
rplF; 50S ribosomal protein L6
SCNpilot_cont_300_bf_scaffold_3378_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8091..8453
DNA (363bp) protein (121aa)
50S ribosomal protein L18 n=2 Tax=Rhizobium/Agrobacterium group RepID=RL18_AGRRK
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" sou
rplR; 50S ribosomal protein L18
SCNpilot_cont_300_bf_scaffold_3378_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8597..9166
DNA (570bp) protein (190aa)
30S ribosomal protein S5 n=5 Tax=Agrobacterium RepID=RS5_AGRT5 rbh
rpsE; 30s ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Ag
SCNpilot_cont_300_bf_scaffold_3378_20
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9179..9367
DNA (189bp) protein (63aa)
50S ribosomal protein L30 n=1 Tax=Rhizobium radiobacter RepID=UPI00035EEE30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/A
rpmD; 50S ribosomal protein L30
SCNpilot_cont_300_bf_scaffold_3378_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9384..9854
DNA (471bp) protein (157aa)
50S ribosomal protein L15 n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X7W3_RHIFR
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobiu
rplO; ribosomal protein L15
SCNpilot_cont_300_bf_scaffold_3378_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10092..11432
DNA (1341bp) protein (447aa)
Protein translocase subunit SecY n=2 Tax=Rhizobium etli RepID=Q2K9J6_RHIEC rbh
secY; preprotein translocase subunit SecY rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhiz
SCNpilot_cont_300_bf_scaffold_3378_23
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11429..11902
DNA (474bp) protein (158aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F1Y9_9RHIZ
adk; adenylate kinase
SCNpilot_cont_300_bf_scaffold_3378_24
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12252..12620
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=2 Tax=Rhizobium RepID=K0PYX1_9RHIZ
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;
rpsM; 30S ribosomal protein S13
SCNpilot_cont_300_bf_scaffold_3378_25
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12756..13145
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=8 Tax=Rhizobium/Agrobacterium group RepID=RS11_AGRT5
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;
SCNpilot_cont_300_bf_scaffold_3378_26
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13243..14253
DNA (1011bp) protein (337aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2P8U1_9RHIZ rbh
rpoA; DNA-directed RNA polymerase subunit alpha
SCNpilot_cont_300_bf_scaffold_3378_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14298..14723
DNA (426bp) protein (142aa)
50S ribosomal protein L17 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD06_9RHIZ
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;"
rplQ; 50S ribosomal protein L17
SCNpilot_cont_300_bf_scaffold_3378_28
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14835..15662)
DNA (828bp) protein (276aa)
MazG family protein n=1 Tax=Rhizobium sp. CF142 RepID=J2L1C3_9RHIZ
MazG family protein {ECO:0000313|EMBL:EJJ26844.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="
mazG; Protein mazG
SCNpilot_cont_300_bf_scaffold_3378_29
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15679..16230)
DNA (552bp) protein (184aa)
Putative guanine/cytosine deaminase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PZV7_9RHIZ
Putative guanine/cytosine deaminase {ECO:0000313|EMBL:CCM75594.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizo
guanine/cytosine deaminase
SCNpilot_cont_300_bf_scaffold_3378_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16470..17918
DNA (1449bp) protein (483aa)
Siroheme synthase/precorrin-2 oxidase {ECO:0000313|EMBL:AHK01289.1}; EC=1.3.1.76 {ECO:0000313|EMBL:AHK01289.1};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhiz
Uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L3A9_AGRSH rbh
cysG; siroheme synthase rbh
Displaying items 1-30 of 32 in total

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