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SCNpilot_cont_300_bf_scaffold_1129

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1129_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..273
DNA (273bp) protein (91aa)
hydroxymethylglutaryl-CoA lyase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003687DAC
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:EMS95195.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacte
hmgL; hydroxymethylglutaryl-CoA lyase
SCNpilot_cont_300_bf_scaffold_1129_2
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

270..1040
DNA (771bp) protein (257aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CSK7_AGRT5 rbh
enoyl-CoA hydratase rbh
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:AAK89913.2}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium grou
SCNpilot_cont_300_bf_scaffold_1129_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1157..2614
DNA (1458bp) protein (486aa)
PAS sensor protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000361C4E3
putative response regulator/GGDEF domain transcriptional regulator
Putative response regulator/GGDEF domain transcriptional regulator {ECO:0000313|EMBL:AHK45340.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinor
SCNpilot_cont_300_bf_scaffold_1129_4
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2621..3013)
DNA (393bp) protein (131aa)
Endoribonuclease L-PSP n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X420_OCHA4
endoribonuclease L-PSP family protein
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABS15974.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (str
SCNpilot_cont_300_bf_scaffold_1129_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3113..4159)
DNA (1047bp) protein (349aa)
3-carboxy-cis,cis-muconate cycloisomerase (EC:5.5.1.2)
PREDICTED: uncharacterized protein C8E4.05c-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C18C28 rbh
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:EPR19410.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
SCNpilot_cont_300_bf_scaffold_1129_6
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4168..4788)
DNA (621bp) protein (207aa)
Protocatechuate 3,4-dioxygenase, alpha subunit n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HCE9_RHIRD rbh
pcaG; protocatechuate 3,4-dioxygenase alpha subunit rbh
Protocatechuate 3,4-dioxygenase {ECO:0000313|EMBL:KJF67236.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium
SCNpilot_cont_300_bf_scaffold_1129_7
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4788..5090)
DNA (303bp) protein (101aa)
Protocatechuate 3,4-dioxygenase beta chain {ECO:0000313|EMBL:CCF21469.1}; EC=1.13.11.3 {ECO:0000313|EMBL:CCF21469.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rh
Protocatechuate 3,4-dioxygenase beta chain n=1 Tax=Rhizobium sp. RepID=L0NKN4_RHISP
pcaH; protocatechuate 3,4-dioxygenase beta subunit
SCNpilot_cont_300_bf_scaffold_1129_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5499..5903)
DNA (405bp) protein (135aa)
4-carboxymuconolactone decarboxylase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2N0_AGRVS
pcaC; 4-carboxymuconolactone decarboxylase
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ACM39128.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrob
SCNpilot_cont_300_bf_scaffold_1129_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5908..6429)
DNA (522bp) protein (174aa)
3-oxoadipate enol-lactonase n=1 Tax=Rhizobium radiobacter RepID=UPI00036A56CD
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:EPR19414.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium
pcaD; beta-ketoadipate enol-lactone hydrolase
SCNpilot_cont_300_bf_scaffold_1129_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6681..7841)
DNA (1161bp) protein (387aa)
4-hydroxybenzoate 3-monooxygenase n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2M7_AGRVS rbh
pobA; 4-hydroxybenzoate 3-monooxygenase rbh
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:ACM39125.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobact
SCNpilot_cont_300_bf_scaffold_1129_11
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7958..8836
DNA (879bp) protein (293aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q8C0_9RHIZ rbh
DNA-binding domain-containing protein, AraC-type rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:CDI10006.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium
SCNpilot_cont_300_bf_scaffold_1129_12
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8895..9659)
DNA (765bp) protein (255aa)
short chain dehydrogenase (EC:1.1.1.100)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037D30A4 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KGJ04642.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus haloph
SCNpilot_cont_300_bf_scaffold_1129_13
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9663..10709)
DNA (1047bp) protein (349aa)
fuconate dehydratase n=1 Tax=Meganema perideroedes RepID=UPI00037FFC46
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EIM77467.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1129_14
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10870..11712)
DNA (843bp) protein (281aa)
ureidoglycolate lyase n=1 Tax=Pannonibacter phragmitetus RepID=UPI00037903B6 rbh
fumarylacetoacetate (FAA) hydrolase family protein
Tax=BJP_IG2158_Rhodobacterales_69_12
SCNpilot_cont_300_bf_scaffold_1129_15
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11766..12710)
DNA (945bp) protein (315aa)
LacI family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000369D647 rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KGJ16649.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Para
sugar ABC transporter substrate-binding protein rbh
SCNpilot_cont_300_bf_scaffold_1129_16
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12754..13767)
DNA (1014bp) protein (338aa)
ribose ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036086E6 rbh
Ribose ABC transporter permease {ECO:0000313|EMBL:KGJ04644.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus
sugar ABC transporter permease
SCNpilot_cont_300_bf_scaffold_1129_17
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13793..14116)
DNA (324bp) protein (108aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
ABC sugar transporter, ATPase subunit protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CIL9_9RHOB
sugar ABC transporter ATPase
SCNpilot_cont_300_bf_scaffold_1129_18
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14146..16065)
DNA (1920bp) protein (640aa)
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
ABC sugar transporter, ATPase subunit protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CIL9_9RHOB rbh
sugar ABC transporter ATPase
SCNpilot_cont_300_bf_scaffold_1129_19
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16100..16837)
DNA (738bp) protein (246aa)
oxidoreductase n=1 Tax=Meganema perideroedes RepID=UPI000372B081 rbh
Oxidoreductase {ECO:0000313|EMBL:KGJ19524.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_1129_20
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16970..17797
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037882F2 rbh
IclR family transcriptional regulator {ECO:0000313|EMBL:KGJ19525.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Para
IclR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1129_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17852..18076
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZU05_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI55564.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
SCNpilot_cont_300_bf_scaffold_1129_22
Mesorhizobium sp. LSHC422A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18243..18851
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000370F04F rbh
Uncharacterized protein {ECO:0000313|EMBL:ESX59772.1}; TaxID=1287294 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
YKOF-like protein
SCNpilot_cont_300_bf_scaffold_1129_23
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18882..19691
DNA (810bp) protein (270aa)
UPI0003CF8BE9 related cluster n=1 Tax=unknown RepID=UPI0003CF8BE9
Uncharacterized protein {ECO:0000313|EMBL:KKB86674.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
binding-protein-dependent transport systems inner membrane component
SCNpilot_cont_300_bf_scaffold_1129_24
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19688..20446
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003707548 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB06902.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geoje
ABC transporter
SCNpilot_cont_300_bf_scaffold_1129_25
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20446..21456
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003742884 rbh
GGDEF domain protein {ECO:0000313|EMBL:KFC71284.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
NMT1/THI5 like domain-containing protein
SCNpilot_cont_300_bf_scaffold_1129_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21529..21705
DNA (177bp) protein (59aa)
Uncharacterized protein {ECO:0000313|EMBL:CAC48617.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" sou
SCNpilot_cont_300_bf_scaffold_1129_27
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21897..24245
DNA (2349bp) protein (783aa)
Glucose dehydrogenase {ECO:0000313|EMBL:KGD95026.1}; EC=1.1.5.2 {ECO:0000313|EMBL:KGD95026.1};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobi
Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family n=1 Tax=Rhizobium sp. CF080 RepID=J2R091_9RHIZ rbh
Glucose dehydrogenase rbh
SCNpilot_cont_300_bf_scaffold_1129_28
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24493..24951)
DNA (459bp) protein (153aa)
signal peptide protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00035D1C4B
Uncharacterized protein {ECO:0000313|EMBL:EJJ29214.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
RTX toxin hemolysin-type calcium-binding protein
SCNpilot_cont_300_bf_scaffold_1129_29
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24993..25343)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037FFDA1
Ribosomal protein P2
Ribosomal protein P2 {ECO:0000313|EMBL:CDN54976.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="
SCNpilot_cont_300_bf_scaffold_1129_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25531..26226
DNA (696bp) protein (232aa)
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETA8_9RHIZ rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR80304.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. D
Transcriptional regulator
Displaying items 1-30 of 39 in total

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