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SCNpilot_cont_300_bf_scaffold_1335

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1335_1
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..255)
DNA (255bp) protein (85aa)
Transcriptional regulator, LysR family n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LM47_RALME
Putative LysR-family transcriptional regulator {ECO:0000313|EMBL:EYF05175.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromy
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1335_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

393..2024
DNA (1632bp) protein (544aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Rhizobium sp. CF080 RepID=J3CGQ1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD87354.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
Probable crotonobetaine/carnitine-CoA ligase
SCNpilot_cont_300_bf_scaffold_1335_3
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2021..3202
DNA (1182bp) protein (394aa)
Acetyl-CoA acetyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2T045_9RHIZ
Thiolase
Thiolase {ECO:0000313|EMBL:CDN56132.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium ga
SCNpilot_cont_300_bf_scaffold_1335_4
unknown

Not on your lists

comp(3148..3717)
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1335_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3768..4376
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CH62_9RHIZ
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EUC01183.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; R
Short chain dehydrogenase family protein 17
SCNpilot_cont_300_bf_scaffold_1335_6
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4441..5733)
DNA (1293bp) protein (431aa)
FAD dependent oxidoreductase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6N9_SPHWW rbh
D-amino acid oxidase {ECO:0000313|EMBL:KGF69421.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
FAD dependent oxidoreductase rbh
SCNpilot_cont_300_bf_scaffold_1335_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5807..6229)
DNA (423bp) protein (141aa)
Endoribonuclease L-PSP n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCU1_SPHWW
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABQ70107.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wit
SCNpilot_cont_300_bf_scaffold_1335_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6271..7437)
DNA (1167bp) protein (389aa)
ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase {ECO:0000313|EMBL:ABQ70108.1}; EC=4.3.1.12 {ECO:0000313|EMBL:ABQ70108.1};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
Ornithine cyclodeaminase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCU2_SPHWW rbh
SCNpilot_cont_300_bf_scaffold_1335_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7566..8726)
DNA (1161bp) protein (387aa)
Cys/Met metabolism pyridoxal-phosphate-dependent protein (EC:2.5.1.48)
Cystathionine beta-lyase/cystathionine gamma-synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z042_9RHIZ rbh
O-succinylhomoserine (Thiol)-lyase {ECO:0000313|EMBL:KFC73152.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.
SCNpilot_cont_300_bf_scaffold_1335_10
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8862..9329
DNA (468bp) protein (156aa)
Transcriptional regulator, AsnC family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A410_9PROT
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EHL98637.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacter
AsnC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1335_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9356..10138)
DNA (783bp) protein (261aa)
ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CT16_9RHIZ rbh
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR78088.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sh
ABC transporter permease protein, putative
SCNpilot_cont_300_bf_scaffold_1335_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10141..11319)
DNA (1179bp) protein (393aa)
Putrescine transport system permease protein PotH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD50_9RHIZ rbh
Putrescine transport system permease protein PotH {ECO:0000313|EMBL:EYR78089.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Sh
putative permease of ABC transporter
SCNpilot_cont_300_bf_scaffold_1335_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11316..12380)
DNA (1065bp) protein (355aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobia
spermidine/putrescine ABC transporter ATPase (EC:3.6.3.31)
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUP9_9RHIZ rbh
SCNpilot_cont_300_bf_scaffold_1335_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12522..13571)
DNA (1050bp) protein (350aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI00030D072F rbh
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHK46033.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; E
SCNpilot_cont_300_bf_scaffold_1335_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13871..14611)
DNA (741bp) protein (247aa)
Protein FixR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D225_9RHIZ rbh
Dehydrogenase {ECO:0000313|EMBL:EYR78092.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-oxoacyl-[acyl-carrier-protein] reductase
SCNpilot_cont_300_bf_scaffold_1335_16
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14678..15355)
DNA (678bp) protein (226aa)
GntR family transcriptional regulator n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G1T2_RHIML rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EHK76676.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinor
Transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1335_17
unknown

Not on your lists

15392..16060
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1335_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16060..16440
DNA (381bp) protein (127aa)
Aminoglycoside phosphotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD53_9RHIZ
putative homoserine kinase type II
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EYR78094.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.
SCNpilot_cont_300_bf_scaffold_1335_19
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16444..17760
DNA (1317bp) protein (439aa)
Aminotransferase n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XDW9_SINMM rbh
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:KJF67905.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobiu
putative 4-aminobutyrate aminotransferase and related aminotransferase
SCNpilot_cont_300_bf_scaffold_1335_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17797..17901)
DNA (105bp) protein (35aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-R
SCNpilot_cont_300_bf_scaffold_1335_21
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17918..18349)
DNA (432bp) protein (144aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-R
clpP-3; ATP-dependent Clp protease proteolytic subunit 3 (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000375A25C
SCNpilot_cont_300_bf_scaffold_1335_22
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18396..18755)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K7Z1_RHILT
Conserved hypothethetical protein
Conserved hypothethetical protein {ECO:0000313|EMBL:CDN58495.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobiu
SCNpilot_cont_300_bf_scaffold_1335_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18752..19066)
DNA (315bp) protein (105aa)
ArsR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI0003693656
regulatory protein ArsR
ArsR family transcriptional regulator {ECO:0000313|EMBL:KDP70790.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensife
SCNpilot_cont_300_bf_scaffold_1335_24
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19152..19610)
DNA (459bp) protein (153aa)
PEP phosphonomutase-like enzyme n=1 Tax=Rhizobium sp. CF142 RepID=J1SWL3_9RHIZ
PEP phosphonomutase-like enzyme {ECO:0000313|EMBL:EJJ29633.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1335_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20292..20495
DNA (204bp) protein (68aa)
Cold shock protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERK1_9RHIZ
Cold shock protein {ECO:0000313|EMBL:EYR84585.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative cold-shock DNA-binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_1335_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20693..21901
DNA (1209bp) protein (403aa)
Fosmidomycin resistance protein Fsr n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLJ2_9RHIZ rbh
Fosmidomycin resistance protein {ECO:0000313|EMBL:KDP75639.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" s
major facilitator superfamily transporter rbh
SCNpilot_cont_300_bf_scaffold_1335_27
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21989..23047
DNA (1059bp) protein (353aa)
Na+/H+ antiporter n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJJ6_BEII9
Na+/H+ antiporter
Na+/H+ antiporter {ECO:0000313|EMBL:ACB94870.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp.
SCNpilot_cont_300_bf_scaffold_1335_28
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22990..23559
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000375B44B
Na+/H+ antiporter
Putative Na(+)/H(+) antiporter {ECO:0000313|EMBL:GAJ92151.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacter
SCNpilot_cont_300_bf_scaffold_1335_29
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23569..24288)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00037F02A0
DNA-binding response regulator in two-component regulatory system wtih UhpB {ECO:0000313|EMBL:CDX19118.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacter
Two component LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1335_30
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(24285..25475)
DNA (1191bp) protein (397aa)
putative sensor histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F0803C
multi-sensor signal transduction histidine kinase
Displaying items 1-30 of 70 in total

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