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SCNpilot_cont_300_bf_scaffold_1599

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1599_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..407
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZY4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80831.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Hypothetical protein
SCNpilot_cont_300_bf_scaffold_1599_2
unknown

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comp(972..1532)
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1599_3
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1827..2156)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DF03_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT01376.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1599_4
Hafnia alvei, Hafnia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2245..3429
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4E109
Uncharacterized protein {ECO:0000313|EMBL:KFC88759.1}; TaxID=910996 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Hafnia.;" source="Hafnia alvei ATCC 1
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1599_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4774..5442
DNA (669bp) protein (223aa)
Protein-L-isoaspartate carboxylmethyltransferase n=1 Tax=Rhizobium sp. CF142 RepID=J2L8V4_9RHIZ
Protein-L-isoaspartate carboxylmethyltransferase {ECO:0000313|EMBL:EJJ29957.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium
Protein-L-isoaspartate carboxylmethyltransferase
SCNpilot_cont_300_bf_scaffold_1599_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5658..6548
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2LI27_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJD41021.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
SCNpilot_cont_300_bf_scaffold_1599_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6687..9530
DNA (2844bp) protein (948aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|H
valS; Valyl-tRNA synthetase (Valine--tRNA ligase) (EC:6.1.1.9) rbh
valyl-tRNA synthetase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003677AE9 rbh
SCNpilot_cont_300_bf_scaffold_1599_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9935..11083
DNA (1149bp) protein (383aa)
Membrane protein involved in aromatic hydrocarbon degradation n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FBH9_9RHIZ rbh
Membrane protein involved in aromatic hydrocarbon degradation {ECO:0000313|EMBL:EHS49825.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizo
fadL; long-chain fatty acid transport protein rbh
SCNpilot_cont_300_bf_scaffold_1599_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11691..12452
DNA (762bp) protein (254aa)
Exopolysaccharide production negative regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B75061
exoR; exopolysaccharide production negative regulator ExoR
Exopolysaccharide production negative regulator ExoR {ECO:0000313|EMBL:AJD41025.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacte
SCNpilot_cont_300_bf_scaffold_1599_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12488..13279)
DNA (792bp) protein (264aa)
Exonuclease III n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JXE9_AGRVS rbh
exonuclease III rbh
Exonuclease III {ECO:0000313|EMBL:ACM36927.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="A
SCNpilot_cont_300_bf_scaffold_1599_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13393..13728)
DNA (336bp) protein (112aa)
Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3PXT3_RHIE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGE58801.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
SCNpilot_cont_300_bf_scaffold_1599_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13935..15152
DNA (1218bp) protein (406aa)
dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=DGTL1_RHIL3
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000255|HAMAP-Rule:MF_01212}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium
SCNpilot_cont_300_bf_scaffold_1599_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15220..15903
DNA (684bp) protein (228aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1432050 species="Bacteria; Pro
arginyl-tRNA synthetase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036208EA
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_300_bf_scaffold_1599_14].
SCNpilot_cont_300_bf_scaffold_1599_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15900..16937
DNA (1038bp) protein (346aa)
Arginine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000255|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00123}; Short=ArgRS {ECO:0000255|HAMAP-Rule:
Arginine--tRNA ligase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=SYR_AGRRK
argS; arginyl-tRNA synthetase
SCNpilot_cont_300_bf_scaffold_1599_15
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16998..18209
DNA (1212bp) protein (404aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J3CC82_9RHIZ
Sporulation domain-containing protein {ECO:0000313|EMBL:EUB95971.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhi
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1599_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18206..19942
DNA (1737bp) protein (579aa)
Tfp pilus assembly protein, tip-associated adhesin PilY1 n=1 Tax=Rhizobium sp. CF142 RepID=J2L8U4_9RHIZ
Tfp pilus assembly protein, tip-associated adhesin PilY1 {ECO:0000313|EMBL:EJJ29947.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrob
sporulation protein
SCNpilot_cont_300_bf_scaffold_1599_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20020..20934
DNA (915bp) protein (305aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiacea
Beta N-acetyl-glucosaminidase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U2U7_9RHIZ
glycosyl hydrolase
Displaying 17 items

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