ggKbase home page

SCNpilot_cont_300_bf_scaffold_664

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_664_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..185)
DNA (183bp) protein (61aa)
cysteine desulfarase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035CCBA8
cysteine desulfurase
Cysteine desulfurase {ECO:0000313|EMBL:AGB71313.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="
SCNpilot_cont_300_bf_scaffold_664_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

403..1080
DNA (678bp) protein (226aa)
Alpha/beta hydrolase protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JFL9_AGRRK
alpha/beta hydrolase
Putative hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EJK81914.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium
SCNpilot_cont_300_bf_scaffold_664_3
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1205..2461)
DNA (1257bp) protein (419aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.170) rbh
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PWT1_9RHIZ rbh
SCNpilot_cont_300_bf_scaffold_664_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2559..3812
DNA (1254bp) protein (418aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:00002
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VKP6_RHILT
SCNpilot_cont_300_bf_scaffold_664_5
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3876..7283)
DNA (3408bp) protein (1136aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CUB0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EUB95657.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
AsmA-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_664_6
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7428..7901
DNA (474bp) protein (158aa)
Bacterioferritin comigratory protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JVS1_AGRVS
bcp; bacterioferritin comigratory protein
Bacterioferritin comigratory protein {ECO:0000313|EMBL:ACM36351.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrob
SCNpilot_cont_300_bf_scaffold_664_7
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7898..8722
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CTR5_9RHIZ rbh
Rhamnosyltransferase {ECO:0000313|EMBL:KGE00500.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source=
Hypothetical protein
SCNpilot_cont_300_bf_scaffold_664_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8826..10118
DNA (1293bp) protein (431aa)
Metalloendopeptidase-like membrane protein n=1 Tax=Rhizobium sp. CF142 RepID=J2APE5_9RHIZ
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:EJJ25080.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
metalloendopeptidase
SCNpilot_cont_300_bf_scaffold_664_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10348..11847
DNA (1500bp) protein (500aa)
DNA/RNA helicase, superfamily II n=1 Tax=Rhizobium sp. CF080 RepID=J2TIJ6_9RHIZ rbh
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EUB95661.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhi
ATP-dependent RNA helicase rbh
SCNpilot_cont_300_bf_scaffold_664_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11878..12297
DNA (420bp) protein (140aa)
NUDIX hydrolase (EC:3.6.1.13)
MutT-like protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8V7_RHIRD
MutT-like protein {ECO:0000313|EMBL:EGP56753.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobact
SCNpilot_cont_300_bf_scaffold_664_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12453..12770)
DNA (318bp) protein (106aa)
Putative regulator protein of competence-specific genes n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MCL8_RHISN
regulator protein of competence-specific genes
Putative regulator protein of competence-specific genes {ECO:0000313|EMBL:ACP25297.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensife
SCNpilot_cont_300_bf_scaffold_664_12
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12773..14407)
DNA (1635bp) protein (545aa)
L-seryl-tRNA(Ser) selenium transferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JFN2_AGRRK
MobA-like NTP transferase domain containing protein {ECO:0000313|EMBL:EUB95664.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacter
Molybdenum cofactor cytidylyltransferase / molybdopterin molybdochelatase
SCNpilot_cont_300_bf_scaffold_664_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14404..15105)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JFN3_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM26723.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agr
SCNpilot_cont_300_bf_scaffold_664_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15105..15431)
DNA (327bp) protein (109aa)
XshC-Cox1-family protein n=7 Tax=Rhizobium meliloti RepID=F6BWF6_SINMB
XshC-Cox1-family protein
Uncharacterized protein {ECO:0000313|EMBL:AGG74335.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
SCNpilot_cont_300_bf_scaffold_664_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15443..16690)
DNA (1248bp) protein (416aa)
von Willebrand factor A n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000372F697
Uncharacterized protein {ECO:0000313|EMBL:ENN89155.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
VWA domain-containing CoxE-like protein
SCNpilot_cont_300_bf_scaffold_664_16
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16698..17618)
DNA (921bp) protein (307aa)
ATPase n=1 Tax=Rhizobium mongolense RepID=UPI0003B44FF9
MoxR-like ATPase protein
MoxR-like ATPase protein {ECO:0000313|EMBL:AJD41401.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sou
SCNpilot_cont_300_bf_scaffold_664_17
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17643..18137)
DNA (495bp) protein (165aa)
Flavoprotein oxidoreductase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QWJ6_9RHIZ
Flavoprotein oxidoreductase {ECO:0000313|EMBL:EKF59712.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium
flavin reductase-like protein
SCNpilot_cont_300_bf_scaffold_664_18
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18341..19429
DNA (1089bp) protein (363aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J2APE6_9RHIZ
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJJ25085.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizo
amino acid ABC transporter
SCNpilot_cont_300_bf_scaffold_664_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19485..20162
DNA (678bp) protein (226aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae
cbbE; Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D136_RHILU rbh
SCNpilot_cont_300_bf_scaffold_664_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20159..20662
DNA (504bp) protein (168aa)
Uncharacterized protein n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B5ZQS7_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI55205.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
SCNpilot_cont_300_bf_scaffold_664_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20739..22043
DNA (1305bp) protein (435aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
purB; adenylosuccinate lyase (EC:4.3.2.2) rbh
Adenylosuccinate lyase PurB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM51_9RHIZ rbh
SCNpilot_cont_300_bf_scaffold_664_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22085..22639
DNA (555bp) protein (185aa)
Putative esterase of the alpha/beta hydrolase fold containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW11_9RHIZ
Putative esterase of the alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:EYR79083.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sh
hypothetical protein
SCNpilot_cont_300_bf_scaffold_664_23
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22734..25304
DNA (2571bp) protein (857aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium sp. CF080 RepID=J2R697_9RHIZ rbh
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EUB95675.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/A
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) rbh
SCNpilot_cont_300_bf_scaffold_664_24
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25352..25666)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2IHF7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95676.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
Hypothetical protein
SCNpilot_cont_300_bf_scaffold_664_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26047..26811
DNA (765bp) protein (255aa)
purC1; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};;
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Rhizobium etli RepID=B3PP56_RHIE6
SCNpilot_cont_300_bf_scaffold_664_26
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26829..27071
DNA (243bp) protein (81aa)
purS; phosphoribosylformylglycinamidine synthase subunit PurS (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formyl
Phosphoribosylformylglycinamidine synthase, purS protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HX73_9RHIZ
SCNpilot_cont_300_bf_scaffold_664_27
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27089..27334
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAS9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEQ11104.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
Hypothetical protein
SCNpilot_cont_300_bf_scaffold_664_28
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27331..28002
DNA (672bp) protein (224aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:000025
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Rhizobium sp. CF122 RepID=J2J8T0_9RHIZ rbh
purQ; phosphoribosylformylglycinamidine synthase I (FGAMsynthase I) PurQ
SCNpilot_cont_300_bf_scaffold_664_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28038..28448
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8U8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP56744.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Ag
hypothetical protein
SCNpilot_cont_300_bf_scaffold_664_30
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28556..28837)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8U7_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:CDN94349.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agroba
hypothetical protein
Displaying items 1-30 of 31 in total

View Taxonomy