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SCNpilot_cont_300_bf_scaffold_979

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_979_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..837
DNA (837bp) protein (279aa)
Putative LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MJS7_RHIL3
LysR family transcriptional regulator
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CAK06783.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium gr
SCNpilot_cont_300_bf_scaffold_979_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(834..1235)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037E4D9B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF86771.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
SCNpilot_cont_300_bf_scaffold_979_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1232..1723)
DNA (492bp) protein (164aa)
major facilitator transporter n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036EC2D8
Multidrug efflux transporter {ECO:0000313|EMBL:EYR79176.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_979_4
unknown

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2120..2725
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_979_5
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2763..3380
DNA (618bp) protein (206aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VP11_9RHIZ
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EJZ20586.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" so
SCNpilot_cont_300_bf_scaffold_979_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3560..4567
DNA (1008bp) protein (336aa)
L-asparaginase II n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0K8N8_RHILT
asparaginase
L-asparaginase II {ECO:0000313|EMBL:EJC73774.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhi
SCNpilot_cont_300_bf_scaffold_979_7
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4761..6752
DNA (1992bp) protein (664aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JTB4_AGRVS rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35827.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" s
SCNpilot_cont_300_bf_scaffold_979_8
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6759..8369)
DNA (1611bp) protein (537aa)
ATP-dependent DNA ligase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00035FC57F
ATP-dependent DNA ligase {ECO:0000313|EMBL:KJF65805.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sou
ATP-dependent DNA ligase
SCNpilot_cont_300_bf_scaffold_979_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8374..9384)
DNA (1011bp) protein (337aa)
Putative exonuclease, DNA ligase-associated n=1 Tax=Rhizobium sp. CF080 RepID=J3BSY6_9RHIZ rbh
Putative exonuclease, DNA ligase-associated {ECO:0000313|EMBL:EUB95393.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium grou
exonuclease DNA ligase-associated protein
SCNpilot_cont_300_bf_scaffold_979_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9581..11884)
DNA (2304bp) protein (768aa)
histidine kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI000375E160 rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC73763.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rh
histidine kinase
SCNpilot_cont_300_bf_scaffold_979_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12151..13515
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES84_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR79159.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pectin lyase fold/virulence factor domain-containing protein
SCNpilot_cont_300_bf_scaffold_979_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13631..14290
DNA (660bp) protein (220aa)
Glutathione S-transferase domain protein n=2 Tax=Rhizobium meliloti RepID=F6E2Y1_SINMK
glutathione-S-transferase rbh
Glutathione-S-transferase {ECO:0000313|EMBL:AHK43711.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source
SCNpilot_cont_300_bf_scaffold_979_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14390..15409)
DNA (1020bp) protein (340aa)
Quinone oxidoreductase n=1 Tax=Rhizobium sp. RepID=L0NCE8_RHISP rbh
NAD(P)H-quinone oxidoreductase {ECO:0000313|EMBL:KGD85940.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
putative quinone oxidoreductase
SCNpilot_cont_300_bf_scaffold_979_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15491..17323)
DNA (1833bp) protein (611aa)
diguanylate cyclase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036EA259
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJC70070.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacte
diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_979_15
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17468..18025)
DNA (558bp) protein (186aa)
HdeD protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI00037D5A28
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJD40420.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
SCNpilot_cont_300_bf_scaffold_979_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18173..18757
DNA (585bp) protein (195aa)
HTH-type transcriptional regulator BetI n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N725_RHILT
BetI family transcriptional regulator
HTH-type transcriptional regulator BetI {ECO:0000256|HAMAP-Rule:MF_00768}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
SCNpilot_cont_300_bf_scaffold_979_17
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18813..20342
DNA (1530bp) protein (510aa)
Choline sulfatase {ECO:0000313|EMBL:CCE95139.1}; EC=3.1.6.6 {ECO:0000313|EMBL:CCE95139.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobi
Choline sulfatase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A249_RHIFH rbh
betC; choline sulfatase
SCNpilot_cont_300_bf_scaffold_979_18
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20344..21174
DNA (831bp) protein (277aa)
betB; betaine aldehyde dehydrogenase (EC:1.2.1.8)
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804, ECO:0000256|SAAS:SAAS00
NAD/NADP-dependent betaine aldehyde dehydrogenase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=BETB_AGRRK
SCNpilot_cont_300_bf_scaffold_979_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21232..21747
DNA (516bp) protein (172aa)
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804};; TaxID=1220581 species
4-trimethylaminobutyraldehyde dehydrogenase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036CC564
betB; betaine aldehyde dehydrogenase
SCNpilot_cont_300_bf_scaffold_979_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21762..22889
DNA (1128bp) protein (376aa)
Oxygen-dependent choline dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00750, ECO:0000256|SAAS:SAAS00054588}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_00750};; Short=CHD {ECO:0000256|HAMAP-Rule:MF_00750};; EC=
Oxygen-dependent choline dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSV0_9RHIZ
betA; choline dehydrogenase
Displaying 20 items

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