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SCNpilot_cont_300_bf_scaffold_2879

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2879_1
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..173)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NY71_9RHIZ
transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EKF44160.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor
SCNpilot_cont_300_bf_scaffold_2879_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

385..1290
DNA (906bp) protein (302aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Nitratireductor indicus C115 RepID=K2PAK6_9RHIZ rbh
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:EKF44161.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;"
Dihydrodipicolinate synthase
SCNpilot_cont_300_bf_scaffold_2879_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1375..2223
DNA (849bp) protein (283aa)
2-hydroxyhepta-2,4-diene-1, 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioate decarboxylase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CGV3_AGRT5 rbh
2-hydroxyhepta-2,4-diene-1, 7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1, 7-dioate decarboxylase {ECO:0000313|EMBL:CDN95351.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria
hpaG; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase rbh
SCNpilot_cont_300_bf_scaffold_2879_4
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2267..3310
DNA (1044bp) protein (348aa)
TRAP dicarboxylate transporter, DctP subunit id=2858783 bin=GWF1_Rhodobacteraceae_65_7 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
TRAP dicarboxylate transporter subunit DctP Tax=GWF1_Rhodobacteraceae_65_7_curated
yiaO2; 2,3-diketo-L-gulonate-binding periplasmic protein YiaO
SCNpilot_cont_300_bf_scaffold_2879_5
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3372..3884
DNA (513bp) protein (171aa)
TRAP-type transport system small permease n=1 Tax=Thauera sp. 63 RepID=N6Y615_9RHOO
Tripartite ATP-independent periplasmic transporter DctQ component Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
dctQ; C4-dicarboxylate transport system permease, small subunit
SCNpilot_cont_300_bf_scaffold_2879_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3881..5161
DNA (1281bp) protein (427aa)
Candidate large permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y119_RAMTT rbh
dctQ; large permease
Candidate large permease component {ECO:0000313|EMBL:AEG92237.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacte
SCNpilot_cont_300_bf_scaffold_2879_7
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5175..5474)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0L9I4_AGRSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM61810.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
SCNpilot_cont_300_bf_scaffold_2879_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5546..6022)
DNA (477bp) protein (159aa)
heat-shock protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003695D6B
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:EJC82954.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium gr
small heat shock protein
SCNpilot_cont_300_bf_scaffold_2879_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6655..7359
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003760430
Uncharacterized protein {ECO:0000313|EMBL:EYR77353.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2879_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7401..8456
DNA (1056bp) protein (352aa)
Penicillin amidase, cysteine peptidase, MEROPS family C59 {ECO:0000313|EMBL:EYR77352.1}; EC=3.5.1.11 {ECO:0000313|EMBL:EYR77352.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteri
Penicillin amidase, Cysteine peptidase, MEROPS family C59 n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B0H8_PARDP rbh
choloylglycine hydrolase
SCNpilot_cont_300_bf_scaffold_2879_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8583..10274)
DNA (1692bp) protein (564aa)
Glycerol-3-phosphate dehydrogenase GlpD {ECO:0000313|EMBL:AFL50487.1}; EC=1.1.5.3 {ECO:0000313|EMBL:AFL50487.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhi
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PGW4_RHIML rbh
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_2879_12
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10267..11304)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3L8_RHIML rbh
Tdh {ECO:0000313|EMBL:KJF70845.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacteriu
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2879_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11612..12547
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PGX3_RHIML rbh
hypothetical protein rbh
Transcriptional regulator LsrR {ECO:0000313|EMBL:AFL50493.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobiu
SCNpilot_cont_300_bf_scaffold_2879_14
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

12764..13699
DNA (936bp) protein (312aa)
Haloacetate dehalogenase DehH n=1 Tax=Octadecabacter arcticus 238 RepID=M9RPT0_9RHOB rbh
Alpha/beta hydrolase family rbh
Alpha/beta hydrolase family {ECO:0000313|EMBL:AHY47753.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rub
SCNpilot_cont_300_bf_scaffold_2879_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13835..14806
DNA (972bp) protein (324aa)
Putative sugar kinase YdjH {ECO:0000313|EMBL:AFL50494.1}; EC=2.7.1.- {ECO:0000313|EMBL:AFL50494.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Si
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3M0_RHIML rbh
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2879_16
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14890..15882
DNA (993bp) protein (331aa)
Deoxyribonucleoside regulator n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X3M3_RHIFR
deoR4; deoxyribonucleoside regulator
Deoxyribonucleoside regulator {ECO:0000313|EMBL:AFL50479.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium
SCNpilot_cont_300_bf_scaffold_2879_17
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..17312
DNA (1176bp) protein (392aa)
Sugar ABC transporter periplasmatic substrate-binding protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RUJ0_9RHOB rbh
sugar ABC transporter periplasmatic substrate-binding protein
Sugar ABC transporter periplasmatic substrate-binding protein {ECO:0000313|EMBL:AGI74201.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oct
SCNpilot_cont_300_bf_scaffold_2879_18
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17392..17808
DNA (417bp) protein (139aa)
ribose transport ATP-binding protein rbsA (EC:3.6.3.17)
Ribose ABC transport system, ATP-binding protein RbsA n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3ACE6_9RHOB
Ribose ABC transport system, ATP-binding protein RbsA {ECO:0000313|EMBL:GAD55319.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella
Displaying 18 items

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