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SCNpilot_cont_300_bf_scaffold_5089

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5089_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..146)
DNA (144bp) protein (48aa)
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:ACA20143.1}; EC=2.8.3.5 {ECO:0000313|EMBL:ACA20143.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylo
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000377DAA4
3-oxoacid CoA-transferase subunit A
SCNpilot_cont_300_bf_scaffold_5089_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

223..822
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036FA558
LuxR family transcriptional regulator {ECO:0000313|EMBL:KKB76843.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia li
Sensory box transcriptional regulator, LuxR family
SCNpilot_cont_300_bf_scaffold_5089_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(840..1700)
DNA (861bp) protein (287aa)
transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037EC147 rbh
Dihydroorotate dehydrogenase (Fumarate) {ECO:0000313|EMBL:ERF84990.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="B
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5089_4
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1817..3265
DNA (1449bp) protein (483aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HKL5_9BRAD rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:KGJ02912.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Parac
HTH-type transcriptional regulator
SCNpilot_cont_300_bf_scaffold_5089_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3355..4410
DNA (1056bp) protein (352aa)
Acyltransferase/acetyltransferase n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FNZ3_PELBH
Uncharacterized protein {ECO:0000313|EMBL:KFL31622.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
acyltransferase family protein
SCNpilot_cont_300_bf_scaffold_5089_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4632..6041
DNA (1410bp) protein (470aa)
nitrate reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037CD6EC rbh
nitrate reductase rbh
Cytosine/uracil/thiamine/allantoin permease {ECO:0000313|EMBL:EJC83550.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
SCNpilot_cont_300_bf_scaffold_5089_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6364..7362)
DNA (999bp) protein (333aa)
Phosphate acetyltransferase Pta {ECO:0000313|EMBL:EYR79266.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EYR79266.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiacea
Phosphate acetyltransferase Pta n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3L4_9RHIZ rbh
dme; NAD-dependent malic enzyme
SCNpilot_cont_300_bf_scaffold_5089_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7362..8321)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUL7_9RHIZ rbh
Membrane protein {ECO:0000313|EMBL:KDP75645.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5089_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8440..9720)
DNA (1281bp) protein (427aa)
Putative sulfoacetaldehyde acetyltransferase Xsc {ECO:0000313|EMBL:EYR79268.1}; EC=2.3.3.15 {ECO:0000313|EMBL:EYR79268.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
sulfoacetaldehyde acetyltransferase (EC:2.3.3.15)
Putative sulfoacetaldehyde acetyltransferase Xsc n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEN6_9RHIZ
SCNpilot_cont_300_bf_scaffold_5089_10
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10193..11593)
DNA (1401bp) protein (467aa)
Gamma-glutamylputrescine oxidoreductase PuuB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW24_9RHIZ rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KDP75647.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" sour
FAD dependent oxidoreductase
SCNpilot_cont_300_bf_scaffold_5089_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11610..11996)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYX3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79270.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5089_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12096..12923)
DNA (828bp) protein (276aa)
Taurine transport system permease protein TauC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3L9_9RHIZ rbh
Taurine transport system permease protein TauC {ECO:0000313|EMBL:EYR79271.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shine
binding-protein-dependent transport system inner membrane protein
SCNpilot_cont_300_bf_scaffold_5089_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12916..13689)
DNA (774bp) protein (258aa)
Taurine import ATP-binding protein TauB {ECO:0000256|HAMAP-Rule:MF_01714}; EC=3.6.3.36 {ECO:0000256|HAMAP-Rule:MF_01714};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
Taurine import ATP-binding protein TauB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUM3_9RHIZ rbh
tauB; ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_5089_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13846..14862)
DNA (1017bp) protein (339aa)
taurine ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036103DB rbh
Taurine-binding periplasmic protein TauA {ECO:0000313|EMBL:EYR79273.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp
taurine-binding protein
SCNpilot_cont_300_bf_scaffold_5089_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14993..16465
DNA (1473bp) protein (491aa)
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUB4_9RHIZ rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR79274.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp.
transcriptional regulator, GntR family
SCNpilot_cont_300_bf_scaffold_5089_16
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16680..16853)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0I2V8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQB19662.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lac
SCNpilot_cont_300_bf_scaffold_5089_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17561..18067
DNA (507bp) protein (169aa)
Transcriptional regulator, IclR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ0_9RHIZ rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EYR79407.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp.
IclR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_5089_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18113..18373
DNA (261bp) protein (87aa)
Transcriptional regulator, IclR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ0_9RHIZ
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EYR79407.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp.
SCNpilot_cont_300_bf_scaffold_5089_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18390..19784)
DNA (1395bp) protein (465aa)
D-hydantoinase HyuA {ECO:0000313|EMBL:EYR79408.1}; EC=3.5.2.- {ECO:0000313|EMBL:EYR79408.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.
phenylhydantoinase (EC:3.5.2.2)
D-hydantoinase HyuA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGY0_9RHIZ rbh
SCNpilot_cont_300_bf_scaffold_5089_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19842..20513)
DNA (672bp) protein (224aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:EYR79409.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR79409.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXW2_9RHIZ rbh
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_5089_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20543..21394)
DNA (852bp) protein (284aa)
ABC transporter permease (EC:3.6.3.31)
Putrescine ABC transporter, permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1C0_9RHIZ rbh
Putrescine ABC transporter, permease protein PotI {ECO:0000313|EMBL:EYR79410.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Sh
SCNpilot_cont_300_bf_scaffold_5089_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21391..21942)
DNA (552bp) protein (184aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5V6_9RHIZ rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR79411.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;"
putative spermidine/putrescine ABC transporter permease
Displaying 22 items

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