ggKbase home page

SCNpilot_cont_300_bf_scaffold_234

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_234_1
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84..389
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CQ07_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74003.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yano
2-alkenal reductase
SCNpilot_cont_300_bf_scaffold_234_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

807..1133
DNA (327bp) protein (109aa)
Putative transposase for insertion sequence element n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL10_9SPHN
putative transposase for insertion sequence element
Putative transposase for insertion sequence element {ECO:0000313|EMBL:BAK67562.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
SCNpilot_cont_300_bf_scaffold_234_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1130..1975
DNA (846bp) protein (282aa)
transposase IS401 n=1 Tax=Sphingomonas melonis RepID=UPI000381847D
Uncharacterized protein {ECO:0000313|EMBL:EKU73228.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yano
putative transposase for insertion sequence element
SCNpilot_cont_300_bf_scaffold_234_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2564..3937)
DNA (1374bp) protein (458aa)
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000377AE6B rbh
phospho-2-dehydro-3-deoxyheptonate aldolase
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:AIT05930.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" so
SCNpilot_cont_300_bf_scaffold_234_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4024..4803)
DNA (780bp) protein (260aa)
3-oxoacyl-ACP reductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B45C9E rbh
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:EWY39546.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_234_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4845..6284)
DNA (1440bp) protein (480aa)
carotenoid oxygenase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002892747
Dioxygenase {ECO:0000313|EMBL:GAO56178.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-
carotenoid oxygenase
SCNpilot_cont_300_bf_scaffold_234_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6383..6937
DNA (555bp) protein (185aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3E5F7
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO56177.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_234_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6923..7810)
DNA (888bp) protein (296aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomo
glucose-1-phosphate thymidylyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6E5ED
glucose-1-phosphate thymidylyltransferase
SCNpilot_cont_300_bf_scaffold_234_9
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7807..8694)
DNA (888bp) protein (296aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EZP55135.1}; EC=1.1.1.133 {ECO:0000313|EMBL:EZP55135.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sph
dTDP-4-dehydrorhamnose reductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B68165
dTDP-4-dehydrorhamnose reductase
SCNpilot_cont_300_bf_scaffold_234_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8691..9746)
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphi
dTDP-glucose 4,6-dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5AABE
dTDP-glucose 4,6-dehydratase
SCNpilot_cont_300_bf_scaffold_234_11
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9756..10322)
DNA (567bp) protein (189aa)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B306F7
dTDP-L-rhamnose biosynthesis protein {ECO:0000313|EMBL:EZP55133.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="S
dTDP-4-dehydrorhamnose 3,5-epimerase
SCNpilot_cont_300_bf_scaffold_234_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10378..11217)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000382231A rbh
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29531.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
dehydrogenase
SCNpilot_cont_300_bf_scaffold_234_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11367..12341
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380A7DD rbh
Peptidase M48 family protein {ECO:0000313|EMBL:EZP57468.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
peptidase M48 family protein
SCNpilot_cont_300_bf_scaffold_234_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12346..13776)
DNA (1431bp) protein (477aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1219050 species="Bacteria; P
Cysteine--tRNA ligase n=1 Tax=Sphingomonas sp. S17 RepID=F3WW27_9SPHN rbh
cysteinyl-tRNA synthetase
SCNpilot_cont_300_bf_scaffold_234_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13952..15244)
DNA (1293bp) protein (431aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
integral membrane sensor signal transduction histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AF8
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_234_16
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15228..15962)
DNA (735bp) protein (245aa)
transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002630AF7
Response regulator(With CheY-like receiver domain and winged-helix DNA-binding domain) {ECO:0000313|EMBL:EZP53853.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonad
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_234_17
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16187..16393
DNA (207bp) protein (69aa)
30S ribosomal protein S21 n=1 Tax=Sphingomonas sp. S17 RepID=F3WW25_9SPHN
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
rpsU; 30S ribosomal protein S21
SCNpilot_cont_300_bf_scaffold_234_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16495..17064
DNA (570bp) protein (190aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036BD456
peptidylprolyl isomerase
SCNpilot_cont_300_bf_scaffold_234_19
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17191..17973)
DNA (783bp) protein (261aa)
metallophosphoesterase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4783C
Putative hydrolase {ECO:0000313|EMBL:GAO39029.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changb
metallophosphoesterase
SCNpilot_cont_300_bf_scaffold_234_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18065..19360)
DNA (1296bp) protein (432aa)
UDP-N-acetyl-D-mannosamine dehydrogenase n=1 Tax=Sphingomonas melonis RepID=UPI000364CEE2 rbh
Sphingomonas taxi strain 30a NODE_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30279.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
SCNpilot_cont_300_bf_scaffold_234_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19347..20462)
DNA (1116bp) protein (372aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EZP52217.1}; EC=5.1.3.14 {ECO:0000313|EMBL:EZP52217.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; S
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002893412
UDP-N-acetylglucosamine 2-epimerase
SCNpilot_cont_300_bf_scaffold_234_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20581..21450
DNA (870bp) protein (290aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=104605 s
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B76BAA rbh
UTP--glucose-1-phosphate uridylyltransferase
SCNpilot_cont_300_bf_scaffold_234_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21447..22445
DNA (999bp) protein (333aa)
NAD dependent epimerase/dehydratase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036C363A
Protein CapI {ECO:0000313|EMBL:KHK90035.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malays
NAD-dependent epimerase/dehydratase
SCNpilot_cont_300_bf_scaffold_234_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22625..22867)
DNA (243bp) protein (81aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B401C8
membrane protein
DNA, contig: SP633 {ECO:0000313|EMBL:GAN14235.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
SCNpilot_cont_300_bf_scaffold_234_25
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22965..23732)
DNA (768bp) protein (256aa)
ThiF family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW16_9SPHN
MoeB protein {ECO:0000313|EMBL:GAN14229.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis
UBA/THIF-type NAD/FAD binding protein
SCNpilot_cont_300_bf_scaffold_234_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23720..24118)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037289A8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05342.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas t
SCNpilot_cont_300_bf_scaffold_234_27
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24115..24561)
DNA (447bp) protein (149aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=DUT_SPHWW
SCNpilot_cont_300_bf_scaffold_234_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24624..25820)
DNA (1197bp) protein (399aa)
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5) rbh
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase {ECO:0000313|EMBL:AIT05344.1}; EC=4.1.1.36 {ECO:0000313|EMBL:AIT05344.1};; EC=6.3.2.5 {ECO:0000313|EMBL:AIT05344.1};
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Sphingomonas sp. S17 RepID=F3WW13_9SPHN
SCNpilot_cont_300_bf_scaffold_234_29
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25817..26929)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A3946 rbh
Putative membrane protein {ECO:0000313|EMBL:EZP52212.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
hypothetical protein
SCNpilot_cont_300_bf_scaffold_234_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26934..28472)
DNA (1539bp) protein (513aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphin
2-octaprenylphenol hydroxylase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B85A5 rbh
2-octaprenylphenol hydroxylase
Displaying items 1-30 of 122 in total

View Taxonomy