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SCNpilot_cont_300_bf_scaffold_1388

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1388_1
unknown

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1388_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122..451)
DNA (330bp) protein (110aa)
Chromosomal replication initiator DnaA domain n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRG5_PARL1
chromosomal replication initiator DnaA domain-containing protein
Chromosomal replication initiator DnaA domain {ECO:0000313|EMBL:ABS62498.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Par
SCNpilot_cont_300_bf_scaffold_1388_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(765..2366)
DNA (1602bp) protein (534aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" so
Multi-sensor signal transduction histidine kinase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTX9_9PROT
Multi-sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_1388_4
bacterium YEK0313, Bacteria

Not on your lists

2607..4373
DNA (1767bp) protein (589aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037214B3
two-component sensor histidine kinase PleC
SCNpilot_cont_300_bf_scaffold_1388_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4549..5301
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037543FC
Uncharacterized protein {ECO:0000313|EMBL:GAO38992.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1388_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5301..5633
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH0_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62503.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivor
SCNpilot_cont_300_bf_scaffold_1388_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5673..5894
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VHS3_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU44267.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodops
SCNpilot_cont_300_bf_scaffold_1388_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5897..6259
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N5Z9_RHOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE28261.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
SCNpilot_cont_300_bf_scaffold_1388_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6327..7919
DNA (1593bp) protein (531aa)
Peptide chain release factor 3 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRH2_PARL1 rbh
peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=402881 species="Bacteria; Proteobacteria; Alphapro
SCNpilot_cont_300_bf_scaffold_1388_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7924..8649)
DNA (726bp) protein (242aa)
Periplasmic protein TonB id=1317132 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
periplasmic protein TonB; K03832 periplasmic protein TonB Tax=GWE1_Thiobacillus_62_9_curated
periplasmic protein TonB
SCNpilot_cont_300_bf_scaffold_1388_11
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8652..10508)
DNA (1857bp) protein (619aa)
Transglutaminase n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AI57_BURGB rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJK49418.1}; TaxID=595500 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gluma
SCNpilot_cont_300_bf_scaffold_1388_12
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10603..11445)
DNA (843bp) protein (281aa)
putative enoyl-CoA hydratase (EC:4.2.1.17)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0003798246 rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:KIE52814.1}; TaxID=1550402 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
SCNpilot_cont_300_bf_scaffold_1388_13
unknown

Not on your lists

comp(11618..11974)
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1388_14
unknown

Not on your lists

comp(12143..12916)
DNA (774bp) protein (258aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1388_15
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13084..13476)
DNA (393bp) protein (131aa)
Ornithine decarboxylase n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2M609_9PROT
Ornithine decarboxylase {ECO:0000313|EMBL:KJE34806.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira
ornithine decarboxylase
SCNpilot_cont_300_bf_scaffold_1388_16
unknown

Not on your lists

13622..14200
DNA (579bp) protein (193aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1388_17
unknown

Not on your lists

14293..14421
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1388_18
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14490..15830)
DNA (1341bp) protein (447aa)
MATE efflux family protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TKQ5_MESCW
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ADV14969.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium c
SCNpilot_cont_300_bf_scaffold_1388_19
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16127..16618)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003768043
Conserved protein {ECO:0000313|EMBL:GAK45133.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1388_20
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17102..18355
DNA (1254bp) protein (418aa)
Iron-sulfur protein n=21 Tax=Pseudomonas RepID=V6A9P0_PSEAI
Acetate permease (Fragment) Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
SCNpilot_cont_300_bf_scaffold_1388_21
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18216..18578)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DIZ0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EJW22048.1}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1388_22
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18868..19464
DNA (597bp) protein (199aa)
Tetracycline repressor protein class H n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3CB95_STRMB
Tetracycline repressor protein class H {ECO:0000313|EMBL:EMF01317.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobarae
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1388_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19471..20256)
DNA (786bp) protein (262aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI1_PARL1 rbh
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS62514.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parv
SCNpilot_cont_300_bf_scaffold_1388_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20253..21002)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036C6EB9
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACE99030.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
SCNpilot_cont_300_bf_scaffold_1388_25
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

Not on your lists

comp(21054..21347)
DNA (294bp) protein (98aa)
GIY-YIG nuclease n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039F0BC5
Excinuclease ABC C subunit domain-containing protein {ECO:0000313|EMBL:KJJ85124.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;
excinuclease ABC subunit C
SCNpilot_cont_300_bf_scaffold_1388_26
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21393..22394)
DNA (1002bp) protein (334aa)
NMT1/THI5 like domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI3_PARL1 rbh
NMT1/THI5-like domain-containing protein {ECO:0000313|EMBL:GAK45139.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NMT1/THI5-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_1388_27
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22526..22987
DNA (462bp) protein (154aa)
chemotaxis protein CheY n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039AC7F9
histidine kinase Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
sensory box protein
SCNpilot_cont_300_bf_scaffold_1388_28
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23100..23669)
DNA (570bp) protein (190aa)
Hypothetical membrane protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K5U7_AZOSB
Uncharacterized protein {ECO:0000313|EMBL:KFB77465.1}; Flags: Precursor;; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulib
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1388_29
unknown

Not on your lists

comp(23731..24237)
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1388_30
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24300..24830)
DNA (531bp) protein (177aa)
Integral membrane protein-like protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRI4_PARL1
integral membrane protein
Integral membrane protein-like protein {ECO:0000313|EMBL:ABS62517.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibacul
Displaying items 1-30 of 32 in total

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