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SCNpilot_cont_300_bf_scaffold_1811

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1811_1
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1672
DNA (1671bp) protein (557aa)
AMP-dependent synthetase and ligase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UMH7_METS4
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACA17128.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Me
SCNpilot_cont_300_bf_scaffold_1811_2
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1885..2325
DNA (441bp) protein (147aa)
DNA binding domain-containing protein n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0EUJ3_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:GAJ81384.1}; TaxID=1206724 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
DNA binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_1811_3
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2322..3170
DNA (849bp) protein (283aa)
alpha/beta hydrolase n=1 Tax=Actinopolymorpha alba RepID=UPI00036A434F rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:ETK37863.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_1811_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3269..4537
DNA (1269bp) protein (423aa)
MFS transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI0003636CF3
Major facilitator transporter {ECO:0000313|EMBL:GAK45845.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_1811_5

Not on your lists

comp(4582..4755)
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00035CE96D
Marine sediment metagenome DNA, contig: S01H1_S26875 {ECO:0000313|EMBL:GAG34545.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1811_6
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4922..5128
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NDQ1_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC62190.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter
SCNpilot_cont_300_bf_scaffold_1811_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5154..5885)
DNA (732bp) protein (244aa)
Diguanylate cyclase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUW0_PARL1
GGDEF family protein {ECO:0000313|EMBL:CDO58942.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi
diguanylate cyclase
SCNpilot_cont_300_bf_scaffold_1811_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6071..6571
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003767335
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
phosphoribosylaminoimidazole carboxylase catalytic subunit
SCNpilot_cont_300_bf_scaffold_1811_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6568..7665
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036BD947
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU36120
phosphoribosylaminoimidazole carboxylase ATPase subunit
SCNpilot_cont_300_bf_scaffold_1811_10
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7851..8855
DNA (1005bp) protein (335aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:000
Aspartate-semialdehyde dehydrogenase n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PH25_9CAUL rbh
aspartate-semialdehyde dehydrogenase
SCNpilot_cont_300_bf_scaffold_1811_11
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8852..9535)
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037A68F5
RpsU-divergently transcribed {ECO:0000313|EMBL:KGB56193.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopy
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1811_12
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9532..10167)
DNA (636bp) protein (212aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUU9_PARL1
peptide deformylase
SCNpilot_cont_300_bf_scaffold_1811_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10254..10466
DNA (213bp) protein (71aa)
30S ribosomal protein S21 n=1 Tax=Methylopila sp. M107 RepID=UPI00036D88FA
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methyloc
SCNpilot_cont_300_bf_scaffold_1811_14
unknown

Not on your lists

10674..11228
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_15
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11290..12807)
DNA (1518bp) protein (506aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TIF7_PARBH
hypothetical protein; K01992 ABC-2 type transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1811_16

Not on your lists

comp(12804..13727)
DNA (924bp) protein (308aa)
ABC transporter, ATP-binding protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BXF3_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KKN99219.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_1811_17
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13851..15434
DNA (1584bp) protein (528aa)
Ferredoxin domain protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U4G3_9PROT rbh
Ferredoxin domain protein {ECO:0000313|EMBL:EDP61023.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1811_18
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15455..16396)
DNA (942bp) protein (314aa)
Cation efflux system protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6P2_BRAJP
Cation efflux system protein {ECO:0000313|EMBL:EJZ33251.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobi
cation efflux system protein
SCNpilot_cont_300_bf_scaffold_1811_19
unknown

Not on your lists

comp(16469..16843)
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_20
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17147..18034
DNA (888bp) protein (296aa)
Taurine dioxygenase {ECO:0000313|EMBL:KGM33804.1}; EC=1.14.11.17 {ECO:0000313|EMBL:KGM33804.1};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillace
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00036A3C9F
alpha-ketoglutarate-dependent taurine dioxygenase
SCNpilot_cont_300_bf_scaffold_1811_21
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18047..18712)
DNA (666bp) protein (222aa)
DSBA oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXQ6_PARL1
DSBA oxidoreductase {ECO:0000313|EMBL:GAK43945.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
DSBA oxidoreductase
SCNpilot_cont_300_bf_scaffold_1811_22
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18941..19555
DNA (615bp) protein (205aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXQ7_PARL1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS64690.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibacu
SCNpilot_cont_300_bf_scaffold_1811_23
unknown

Not on your lists

comp(19573..19968)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20065..21183
DNA (1119bp) protein (373aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXR2_PARL1 rbh
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABS64695.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" sou
SCNpilot_cont_300_bf_scaffold_1811_25
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21197..21931
DNA (735bp) protein (245aa)
Phosphoglycerate mutase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXR3_PARL1
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:GAK43940.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_300_bf_scaffold_1811_26
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21944..22645)
DNA (702bp) protein (234aa)
Putative aspartyl protease n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4A2_CAUSK
putative aspartyl protease
Putative aspartyl protease {ECO:0000313|EMBL:ABZ69402.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp.
SCNpilot_cont_300_bf_scaffold_1811_27
unknown

Not on your lists

22751..23110
DNA (360bp) protein (120aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1811_28
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23592..23957)
DNA (366bp) protein (122aa)
Lactoylglutathione lyase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGK4_PHEZH
lactoylglutathione lyase Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
lactoylglutathione lyase
SCNpilot_cont_300_bf_scaffold_1811_29
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23983..24372)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GQ68_9BRAD
Glyoxalase {ECO:0000313|EMBL:KJE52398.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
dioxygenase
SCNpilot_cont_300_bf_scaffold_1811_30
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24381..25619)
DNA (1239bp) protein (413aa)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:CDO60722.1}; EC=1.3.8.1 {ECO:0000313|EMBL:CDO60722.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRQ5_PARL1
acyl-CoA dehydrogenase domain-containing protein
Displaying items 1-30 of 59 in total

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