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SCNpilot_cont_300_bf_scaffold_2928

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2928_1
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2280)
DNA (2280bp) protein (760aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=991905 species="Bacteria; Pr
DNA gyrase subunit B n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXP5_POLGS
gyrB; DNA gyrase subunit B
SCNpilot_cont_300_bf_scaffold_2928_2
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2286..3107)
DNA (822bp) protein (274aa)
DNA replication and repair protein RecF n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SB28_PHAFV
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodos
recF; DNA replication and repair protein recF
SCNpilot_cont_300_bf_scaffold_2928_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3461..4579)
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=402881 species="Bacter
DNA polymerase III subunit beta n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HNZ4_PARL1
DNA polymerase III subunit beta
SCNpilot_cont_300_bf_scaffold_2928_4
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4797..5225)
DNA (429bp) protein (143aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Micavibrio aeruginosavorus (strain ARL-13) RepID=G2KR69_MICAA
Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=856793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" sour
SCNpilot_cont_300_bf_scaffold_2928_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5198..6166)
DNA (969bp) protein (323aa)
chromosomal replication initiator protein DnaA n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488598
dnaA; chromosomal replication initiation protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodo
SCNpilot_cont_300_bf_scaffold_2928_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6304..6753)
DNA (450bp) protein (150aa)
Rhodanese domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HNZ2_PARL1
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:ABS61625.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivo
SCNpilot_cont_300_bf_scaffold_2928_7
Thalassobacter sp. 16PALIMAR09, Thalassobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7227..7493)
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JM09_9RHOB
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1225651 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobacter.;" source="Thalasso
SSU ribosomal protein S20p
SCNpilot_cont_300_bf_scaffold_2928_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7565..8341)
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZC6_PARL1
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:GAK43845.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
SCNpilot_cont_300_bf_scaffold_2928_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8436..8939
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07LB5_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07269.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
SCNpilot_cont_300_bf_scaffold_2928_10
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9428..9664
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Janthinobacterium lividum RepID=UPI00028861D7
Aminoglycoside 6-N-acetyltransferase {ECO:0000313|EMBL:AAR18814.1}; TaxID=573 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebs
aminoglycoside 6-N-acetyltransferase
SCNpilot_cont_300_bf_scaffold_2928_11
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9905..10327)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000366C30E
Peptide chain release factor I {ECO:0000313|EMBL:KJS34056.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bac
class I peptide chain release factor
SCNpilot_cont_300_bf_scaffold_2928_12
unknown

Not on your lists

comp(10290..10583)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2928_13
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10828..11244
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ER82_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ38676.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
SCNpilot_cont_300_bf_scaffold_2928_14
Serratia sp. DD3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11656..12105
DNA (450bp) protein (150aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Serratia sp. DD3 RepID=V5C4B0_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KEY60996.1}; TaxID=1410619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. DD3
activator of Hsp90 ATPase 1 family protein
SCNpilot_cont_300_bf_scaffold_2928_15

Not on your lists

comp(12122..12688)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HB67_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKN77386.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2928_16
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12796..13206
DNA (411bp) protein (137aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:CCG04910.1}; EC=2.1.1.64 {ECO:0000313|EMBL:CCG04910.1};; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophi
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RK54_BLASD
SCNpilot_cont_300_bf_scaffold_2928_17
Roseibacterium elongatum, Roseibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13197..14021)
DNA (825bp) protein (275aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule
UPI0003D1B091 related cluster n=1 Tax=unknown RepID=UPI0003D1B091 rbh
SCNpilot_cont_300_bf_scaffold_2928_18
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14513..14794
DNA (282bp) protein (94aa)
ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (EC:2.1.1.-)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003775F15
ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_cont_300_bf_scaffold_2928_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14794..16356
DNA (1563bp) protein (521aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiacea
2-polyprenylphenol 6-hydroxylase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZC2_PARL1 rbh
2-polyprenylphenol 6-hydroxylase
SCNpilot_cont_300_bf_scaffold_2928_20
unknown

Not on your lists

comp(16540..16968)
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2928_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17062..18468)
DNA (1407bp) protein (469aa)
MATE efflux family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7J2_9BRAD
MATE efflux family protein {ECO:0000313|EMBL:EFI51202.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
MATE efflux family protein
SCNpilot_cont_300_bf_scaffold_2928_22
unknown

Not on your lists

comp(18594..18692)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2928_23
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18970..20253
DNA (1284bp) protein (428aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTT5_PARL1 rbh
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABS63318.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculu
SCNpilot_cont_300_bf_scaffold_2928_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20399..21340
DNA (942bp) protein (314aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPJ8_PARL1
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ABS61831.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvi
SCNpilot_cont_300_bf_scaffold_2928_25
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21353..21556
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003660C76
Oxidoreductase {ECO:0000313|EMBL:KIA93154.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;
NADPH dehydrogenase
SCNpilot_cont_300_bf_scaffold_2928_26
Pseudomonas entomophila, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21541..22374
DNA (834bp) protein (278aa)
xenA; xenobiotic reductase A (EC:1.-.-.-)
Xenobiotic reductase A {ECO:0000313|EMBL:CAK16750.1}; EC=1.-.-.- {ECO:0000313|EMBL:CAK16750.1};; TaxID=384676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae;
Xenobiotic reductase A n=2 Tax=Pseudomonas fluorescens group RepID=M4JZ80_9PSED
SCNpilot_cont_300_bf_scaffold_2928_27
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22381..23010)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JDM5_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB66487.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp.
SCNpilot_cont_300_bf_scaffold_2928_28
unknown

Not on your lists

23372..23512
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2928_29
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24018..24212)
DNA (195bp) protein (65aa)
Putative transcriptional regulator, Rrf2 family n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z5Z0_AZOL4
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CCQ75731.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira
Displaying 29 items

View Taxonomy