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SCNpilot_cont_300_bf_scaffold_2978

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2978_1
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2..946
DNA (945bp) protein (315aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952, ECO:0000313|EMBL:CDO61429.1};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1458461
DNA topoisomerase I n=1 Tax=Xanthobacteraceae RepID=UPI00036A281A
DNA topoisomerase I
SCNpilot_cont_300_bf_scaffold_2978_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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943..1266
DNA (324bp) protein (108aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952, ECO:0000256|RuleBase:RU000518};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=48936
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VM77_9SPHN
SCNpilot_cont_300_bf_scaffold_2978_3
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1373..3205
DNA (1833bp) protein (611aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=402881 species="Bacteria; Proteobacteria; Alph
Ribonuclease R n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX04_PARL1
ribonuclease R
SCNpilot_cont_300_bf_scaffold_2978_4
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3166..3522
DNA (357bp) protein (119aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1037409 species="Bacteria; Proteobacteria; Alp
ribonuclease R n=1 Tax=Bradyrhizobium japonicum RepID=UPI000376EC3F
exoribonuclease
SCNpilot_cont_300_bf_scaffold_2978_5
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3888..4250
DNA (363bp) protein (121aa)
NUDIX hydrolase n=1 Tax=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) RepID=Q15SJ8_PSEA6
NUDIX hydrolase
NUDIX hydrolase Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_300_bf_scaffold_2978_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4247..5392
DNA (1146bp) protein (382aa)
Major facilitator superfamily MFS_1 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWZ9_PARL1 rbh
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABS64432.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum
SCNpilot_cont_300_bf_scaffold_2978_7
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

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5455..5622
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A900D0
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
50S ribosomal protein L33
SCNpilot_cont_300_bf_scaffold_2978_8

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comp(5623..6537)
DNA (915bp) protein (305aa)
Lipase/esterase n=1 Tax=uncultured bacterium RepID=G3C5S9_9BACT
Lipase/esterase {ECO:0000313|EMBL:ADM63077.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_2978_9
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6569..7474)
DNA (906bp) protein (302aa)
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:CDO59200.1}; EC=3.1.1.24 {ECO:0000313|EMBL:CDO59200.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phae
Lipase/esterase n=1 Tax=uncultured bacterium RepID=G3C5T0_9BACT
alpha/beta hydrolase fold protein
SCNpilot_cont_300_bf_scaffold_2978_10
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7597..9219
DNA (1623bp) protein (541aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:CDO59202.1}; EC=1.1.5.3 {ECO:0000313|EMBL:CDO59202.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarin
FAD dependent oxidoreductase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTQ7_PARL1 rbh
FAD dependent oxidoreductase
SCNpilot_cont_300_bf_scaffold_2978_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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9216..10154
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000372885F
Diacylglycerol kinase catalytic subunit {ECO:0000313|EMBL:GAK45472.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
diacylglycerol kinase catalytic subunit
SCNpilot_cont_300_bf_scaffold_2978_12
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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10181..10819
DNA (639bp) protein (213aa)
Alkylglycerone-phosphate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTQ5_PARL1
Alkyldihydroxyacetonephosphate synthase {ECO:0000313|EMBL:KIG17442.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
alkylglycerone-phosphate synthase
SCNpilot_cont_300_bf_scaffold_2978_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10961..11800
DNA (840bp) protein (280aa)
Alkylglycerone-phosphate synthase {ECO:0000313|EMBL:ABS63288.1}; EC=2.5.1.26 {ECO:0000313|EMBL:ABS63288.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiac
Alkylglycerone-phosphate synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTQ5_PARL1
alkylglycerone-phosphate synthase
SCNpilot_cont_300_bf_scaffold_2978_14

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comp(11797..12747)
DNA (951bp) protein (317aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=G3CRG1_9ZZZZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:AEM45144.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
alpha/beta hydrolase domain-containing protein
SCNpilot_cont_300_bf_scaffold_2978_15
unknown

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comp(12817..13023)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2978_16
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13083..13640)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030FDD16
Uncharacterized protein {ECO:0000313|EMBL:EAS49353.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing
Putative transmembrane protein
SCNpilot_cont_300_bf_scaffold_2978_17
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13637..15463)
DNA (1827bp) protein (609aa)
AMP-dependent synthetase and ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTP7_PARL1 rbh
acyl-CoA synthetase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS63280.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum
SCNpilot_cont_300_bf_scaffold_2978_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15568..16779
DNA (1212bp) protein (404aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:ABS65254.1}; EC=4.1.1.36 {ECO:0000313|EMBL:ABS65254.1};; EC=6.3.2.5 {ECO:0000313|EMBL:ABS65254.1};; Tax
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZC1_PARL1 rbh
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
SCNpilot_cont_300_bf_scaffold_2978_19
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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16779..17237
DNA (459bp) protein (153aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VE95_9PROT
SCNpilot_cont_300_bf_scaffold_2978_20
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17244..17363
DNA (120bp) protein (40aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZB9_PARL1
Predicted transcriptional regulator of cysteine synthase, Rrf2 family {ECO:0000313|EMBL:CDO59888.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.
BadM/Rrf2 family transcriptional regulator
Displaying 20 items

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