ggKbase home page

SCNpilot_cont_300_bf_scaffold_6403

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_6403_1
Roseibium sp. TrichSKD4, Roseibium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..954
DNA (954bp) protein (318aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae;
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036C0907
Alkaline phosphatase synthesis sensor protein phor
SCNpilot_cont_300_bf_scaffold_6403_2
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

951..2483
DNA (1533bp) protein (511aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036480C1
Chlorosome protein {ECO:0000313|EMBL:KGF69921.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
P-loop hydrolase
SCNpilot_cont_300_bf_scaffold_6403_3
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2508..6236
DNA (3729bp) protein (1243aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000362C9B2 rbh
Double-strand break repair protein AddB
Double-strand break repair protein AddB {ECO:0000313|EMBL:ADZ72614.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793
SCNpilot_cont_300_bf_scaffold_6403_4
bacterium YEK0313, Bacteria

Not on your lists

6233..7258
DNA (1026bp) protein (342aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360250D
double-strand break repair helicase AddA, alphaproteobacterial type
SCNpilot_cont_300_bf_scaffold_6403_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7224..9650
DNA (2427bp) protein (809aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilv
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000360250D
Double-strand break repair helicase AddA
SCNpilot_cont_300_bf_scaffold_6403_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9727..9999
DNA (273bp) protein (91aa)
Thioredoxin n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6X9_POLGS
Thiol-disulfide isomerase and thioredoxins
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26
SCNpilot_cont_300_bf_scaffold_6403_7
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10122..11441)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036C92BF rbh
Bifunctional folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:ELT46474.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobac
Folylpolyglutamate synthetase
SCNpilot_cont_300_bf_scaffold_6403_8
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11537..12442)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003720166 rbh
acetyl-CoA carboxylase carboxyl transferase subunit beta
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltr
SCNpilot_cont_300_bf_scaffold_6403_9
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12457..13230)
DNA (774bp) protein (258aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; Flags: Precursor;; TaxI
trpA; tryptophan synthase alpha chain (EC:4.2.1.20)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000380DD6C
SCNpilot_cont_300_bf_scaffold_6403_10
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13297..14520)
DNA (1224bp) protein (408aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bru
tryptophan synthase subunit beta n=1 Tax=Kaistia granuli RepID=UPI00036B3128
tryptophan synthase subunit beta
SCNpilot_cont_300_bf_scaffold_6403_11
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14531..15202)
DNA (672bp) protein (224aa)
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371AD1C
SCNpilot_cont_300_bf_scaffold_6403_12
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15279..15776)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00037E7A85
Wenxma_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ71047.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenx
MarR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_6403_13
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15862..17073
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000375B3BD rbh
Oxalate/formate antiporter {ECO:0000313|EMBL:EYD75983.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimic
major Facilitator Superfamily protein
SCNpilot_cont_300_bf_scaffold_6403_14
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17080..17424)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003629443
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA16954.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" sou
SCNpilot_cont_300_bf_scaffold_6403_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17450..17731)
DNA (282bp) protein (94aa)
transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI00037932FD
integration host factor subunit beta
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=991905 species="Bacteria; Proteobacteria
SCNpilot_cont_300_bf_scaffold_6403_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17728..18726)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364CAE3 rbh
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:CDX32582.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="M
sppA; peptidase S49 protein
SCNpilot_cont_300_bf_scaffold_6403_17
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18920..20554)
DNA (1635bp) protein (545aa)
30S ribosomal protein S1 n=1 Tax=Kaistia granuli RepID=UPI00036ADE87 rbh
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangens
30S ribosomal protein S1
SCNpilot_cont_300_bf_scaffold_6403_18
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20846..21469)
DNA (624bp) protein (208aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:
cmk; cytidylate kinase, Cytidine monophosphate kinase (EC:2.7.4.14)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003814966
SCNpilot_cont_300_bf_scaffold_6403_19
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21466..22761)
DNA (1296bp) protein (432aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036915BC
3-phosphoshikimate 1-carboxyvinyltransferase
SCNpilot_cont_300_bf_scaffold_6403_20
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22969..23358
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000365C63B
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09927.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhiz
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6403_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23823..24236
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003619509
Uncharacterized protein {ECO:0000313|EMBL:EKS29904.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_6403_22
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24282..25103)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000360A7D5 rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI51447.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia
hypothetical protein
Displaying 22 items

View Taxonomy