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SCNpilot_cont_300_bf_scaffold_2161

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2161_1
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..473)
DNA (471bp) protein (157aa)
sugar ABC transporter permease n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000381078C
Permease component of ABC-type sugar transporter {ECO:0000313|EMBL:EJL58271.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhiz
binding-protein-dependent transport system inner membrane protein
SCNpilot_cont_300_bf_scaffold_2161_2
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(669..1919)
DNA (1251bp) protein (417aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FMU3_9RHIZ
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW89987.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" s
family 1 extracellular solute-binding protein
SCNpilot_cont_300_bf_scaffold_2161_3
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1973..3487)
DNA (1515bp) protein (505aa)
Aldehyde dehydrogenase family 2 member C4 {ECO:0000313|EMBL:CDX30717.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CDX30717.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; P
UPI0003CFAC05 related cluster n=1 Tax=unknown RepID=UPI0003CFAC05
aldehyde dehydrogenase
SCNpilot_cont_300_bf_scaffold_2161_4
Brucella melitensis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3489..3851)
DNA (363bp) protein (121aa)
Enoyl-CoA hydratase/isomerase n=21 Tax=Brucella melitensis RepID=C0RFT4_BRUMB
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ADZ67108.1}; TaxID=941967 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella melitensis (st
SCNpilot_cont_300_bf_scaffold_2161_5
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4220..5812)
DNA (1593bp) protein (531aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobact
Acetyl-CoA:acetoacetyl-CoA transferase a subunit (EC:2.8.3.-)
UPI0003CE846C related cluster n=1 Tax=unknown RepID=UPI0003CE846C
SCNpilot_cont_300_bf_scaffold_2161_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5929..7866)
DNA (1938bp) protein (646aa)
afr; 1,5-anhydro-D-fructose reductase (EC:1.1.1.292)
1,5-anhydro-D-fructose reductase {ECO:0000313|EMBL:AJD41902.1}; EC=1.1.1.292 {ECO:0000313|EMBL:AJD41902.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobia
1,5-anhydro-D-fructose reductase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036DE0CA
SCNpilot_cont_300_bf_scaffold_2161_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8136..9101)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375BA93
Transcriptional regulator {ECO:0000313|EMBL:EJJ26399.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" so
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2161_8
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9347..10372
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003630180
Oxidoreductase {ECO:0000313|EMBL:KGM33362.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;
oxidoreductase domain-containing protein
SCNpilot_cont_300_bf_scaffold_2161_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10384..11289
DNA (906bp) protein (302aa)
sugar phosphate isomerase n=1 Tax=Kaistia granuli RepID=UPI00036A4D6F rbh
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:CDX13126.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2161_10
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11451..12470
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YFY7_MESOW rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH88018.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source=
SCNpilot_cont_300_bf_scaffold_2161_11
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12544..13356
DNA (813bp) protein (271aa)
Sugar ABC transporter ATPase n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H2U2_9RHIZ rbh
Sugar ABC transporter ATPase {ECO:0000313|EMBL:ESZ07132.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobiu
ABC transporter rbh
SCNpilot_cont_300_bf_scaffold_2161_12
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13353..14354
DNA (1002bp) protein (334aa)
Permease protein of ribose ABC transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98KF2_RHILO
ribose ABC transporter permease
Permease protein of ribose ABC transporter {ECO:0000313|EMBL:BAB48862.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source=
SCNpilot_cont_300_bf_scaffold_2161_13
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14457..14939)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037C1AE5
Uncharacterized protein {ECO:0000313|EMBL:KJS23918.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2161_14
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14996..15463)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B0499
ptsN; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2:PTS IIA-like nitrogen-regulatory protein PtsN
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2:PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:ADZ72351.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alpha
SCNpilot_cont_300_bf_scaffold_2161_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15568..16170)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003693D47
sigma-54 modulation protein
Sigma-54 modulation protein {ECO:0000313|EMBL:EHJ98170.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium
SCNpilot_cont_300_bf_scaffold_2161_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16434..17927)
DNA (1494bp) protein (498aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000378CB9A
RNA polymerase sigma-54 subunit RpoN
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novell
SCNpilot_cont_300_bf_scaffold_2161_17
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18005..18823)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036FA734 rbh
ABC transporter ATP-binding protein
Probable ABC transporter ATP-binding protein AZC_3926; ORF1; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium c
SCNpilot_cont_300_bf_scaffold_2161_18
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18869..19573)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035D483F
hypothetical protein
OstA family protein {ECO:0000313|EMBL:EHP93793.1}; Flags: Precursor;; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source=
SCNpilot_cont_300_bf_scaffold_2161_19
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19524..20225)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036D6F20
Uncharacterized protein {ECO:0000313|EMBL:KGF68204.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2161_20
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20289..20903)
DNA (615bp) protein (205aa)
3''''-5'''' exonuclease n=1 Tax=Kaistia granuli RepID=UPI000363BB61 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR56901.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium di
SCNpilot_cont_300_bf_scaffold_2161_21
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21009..22043
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036878EF rbh
Putative dehydrogenase {ECO:0000313|EMBL:EIM26160.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidi
oxidoreductase domain-containing protein
SCNpilot_cont_300_bf_scaffold_2161_22
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22141..22569
DNA (429bp) protein (143aa)
heat-shock protein n=1 Tax=Kaistia granuli RepID=UPI0003695EF3
Small heat shock protein {ECO:0000313|EMBL:EAV44311.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata
small heat shock protein; HSP20-like chaperone
SCNpilot_cont_300_bf_scaffold_2161_23
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22607..22858
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000379FEE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL59604.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
SCNpilot_cont_300_bf_scaffold_2161_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22907..23455)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKQ7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM24549.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononid
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2161_25
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23557..25974)
DNA (2418bp) protein (806aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369E410 rbh
SCNpilot_cont_300_bf_scaffold_2161_26
Bartonella tamiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25984..26280)
DNA (297bp) protein (99aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Kaistia granuli RepID=UPI000374F092
Suspect SCG annotation. See neighboring gene [SCNpilot_cont_300_bf_scaffold_2161_27].
Phenylalanyl-tRNA synthetase, alpha subunit
SCNpilot_cont_300_bf_scaffold_2161_27
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26243..27007)
DNA (765bp) protein (255aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-t
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Kaistia granuli RepID=UPI000374F092
SCNpilot_cont_300_bf_scaffold_2161_28
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27187..27555)
DNA (369bp) protein (123aa)
50S ribosomal protein L20 n=1 Tax=Kaistia granuli RepID=UPI00036DF503
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labr
rplT; Phenylalanyl-tRNA synthetase, alpha subunit
SCNpilot_cont_300_bf_scaffold_2161_29
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27581..27775)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Kaistia granuli RepID=UPI000371E527
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilv
SCNpilot_cont_300_bf_scaffold_2161_30
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28030..28371)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000369ECDE
Translation initiation factor IF-3 {ECO:0000313|EMBL:KHJ53415.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas
infC; translation initiation factor IF-3
Displaying items 1-30 of 37 in total

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