ggKbase home page

SCNpilot_cont_300_bf_scaffold_613

Search features with annotation key words

Displaying items 1-30 of 242 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_613_1
unknown

Not on your lists

comp(50..1687)
DNA (1638bp) protein (546aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_613_2
unknown

Not on your lists

comp(1843..2928)
DNA (1086bp) protein (362aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_613_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3052..4470)
DNA (1419bp) protein (473aa)
Type I secretion membrane fusion protein, HlyD family n=1 Tax=Caulobacter sp. AP07 RepID=J2HPT9_9CAUL rbh
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:EJL37853.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacte
HlyD family type I secretion membrane fusion protein rbh
SCNpilot_cont_300_bf_scaffold_613_4
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4474..6627)
DNA (2154bp) protein (718aa)
Leukotoxin translocation ATP-binding protein LktB {ECO:0000313|EMBL:EEE35969.1}; EC=3.6.3.43 {ECO:0000313|EMBL:EEE35969.1};; TaxID=467661 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodob
Leukotoxin translocation ATP-binding protein LktB n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NV51_9RHOB rbh
type I secretion system ATPase rbh
SCNpilot_cont_300_bf_scaffold_613_5
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7100..8254)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MK42_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW15778.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8670..9485)
DNA (816bp) protein (272aa)
recombinase RecJ n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380A002
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29678.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
recombinase RecJ
SCNpilot_cont_300_bf_scaffold_613_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9503..10480)
DNA (978bp) protein (326aa)
recombinase RecJ n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287ED63
recombinase RecJ
Recombinase RecJ {ECO:0000313|EMBL:AIT06100.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_613_8
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10582..10902)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV96_SPHAL
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_9
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10989..11843
DNA (855bp) protein (285aa)
Transcriptional regulator, LysR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV95_SPHAL
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KGB56596.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source=
SCNpilot_cont_300_bf_scaffold_613_10
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11854..12489
DNA (636bp) protein (212aa)
Glutathione S-transferase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XK37_SORCE rbh
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGP32165.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium
SCNpilot_cont_300_bf_scaffold_613_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12491..13111)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036732F2
DNA, contig: SP630 {ECO:0000313|EMBL:GAN13916.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
oxygenase
SCNpilot_cont_300_bf_scaffold_613_12
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13249..14256)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDE3
Uncharacterized protein {ECO:0000313|EMBL:EIZ80244.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14374..15408)
DNA (1035bp) protein (345aa)
glucosyl transferase n=1 Tax=Sphingomonas melonis RepID=UPI0003798867
Glycosyl transferase 2 family protein {ECO:0000313|EMBL:EZP51071.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
glycosyltransferase
SCNpilot_cont_300_bf_scaffold_613_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15544..17349)
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000373A751 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM02666.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas p
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_15
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17478..19082)
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003795D1C rbh
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13193.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
peptidase S10 family protein rbh
SCNpilot_cont_300_bf_scaffold_613_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19359..21464)
DNA (2106bp) protein (702aa)
GTP pyrophosphokinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B48F35 rbh
Sphingomonas taxi strain 30a NODE_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26533.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
GTP pyrophosphokinase rbh
SCNpilot_cont_300_bf_scaffold_613_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21568..21930)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D7954
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP73073.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
SCNpilot_cont_300_bf_scaffold_613_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22064..22543
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369A5E2
Sphingomonas taxi strain 30a NODE_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26531.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_613_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22667..23623)
DNA (957bp) protein (319aa)
flavonol synthase n=2 Tax=Sphingomonas melonis RepID=UPI0003814720 rbh
flavonol synthase rbh
Flavonol synthase {ECO:0000313|EMBL:AIT06371.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_613_20
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23798..24121)
DNA (324bp) protein (108aa)
DNA-binding protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003614680
Nucleoid-associated protein NX02_04975 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sou
nucleoid-associated protein
SCNpilot_cont_300_bf_scaffold_613_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24118..25734)
DNA (1617bp) protein (539aa)
DNA polymerase III subunit gamma/tau n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B676BA
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29676.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
DNA polymerase III subunit gamma/tau
SCNpilot_cont_300_bf_scaffold_613_22
Sphingomonas sp. Mn802worker, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25967..26224)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003779B7D
SCNpilot_cont_300_bf_scaffold_613_23
Pseudopodoces humilis, Pseudopodoces, Passeriformes, Aves, Chordata, Metazoa

Not on your lists

comp(26249..26539)
DNA (291bp) protein (97aa)
PREDICTED: histone-lysine N-methyltransferase set1-like n=1 Tax=Pseudopodoces humilis RepID=UPI000395D720
SCNpilot_cont_300_bf_scaffold_613_24
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26585..26914)
DNA (330bp) protein (110aa)
Ferredoxin n=2 Tax=Sphingomonas wittichii RepID=A5V2B0_SPHWW
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ABQ66426.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (stra
SCNpilot_cont_300_bf_scaffold_613_25
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26911..27981)
DNA (1071bp) protein (357aa)
aminotransferase n=1 Tax=Sphingomonas melonis RepID=UPI00037D1BF1 rbh
IscS protein {ECO:0000313|EMBL:GAN12535.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis
aminotransferase
SCNpilot_cont_300_bf_scaffold_613_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27978..29042)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037CF918 rbh
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29688.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
aminotransferase rbh
SCNpilot_cont_300_bf_scaffold_613_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29149..29805
DNA (657bp) protein (219aa)
alpha/beta hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B37431
DNA, contig: SP611 {ECO:0000313|EMBL:GAN12537.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
alpha/beta hydrolase
SCNpilot_cont_300_bf_scaffold_613_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29934..30125)
DNA (192bp) protein (64aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4BED8
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29674.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
membrane protein
SCNpilot_cont_300_bf_scaffold_613_29
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30122..31069)
DNA (948bp) protein (316aa)
acetyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B57CD4
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
acetyl-CoA carboxylase subunit alpha
SCNpilot_cont_300_bf_scaffold_613_30
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31079..31975)
DNA (897bp) protein (299aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB152 rbh
Recombinase XerD {ECO:0000313|EMBL:KHA64757.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20
recombinase XerD
Displaying items 1-30 of 242 in total

View Taxonomy