ggKbase home page

SCNpilot_cont_300_bf_scaffold_904

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_904_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(653..2965)
DNA (2313bp) protein (771aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289E6D4
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AIT08009.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas t
SCNpilot_cont_300_bf_scaffold_904_2
unknown

Not on your lists

comp(3006..3230)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_904_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3619..4548
DNA (930bp) protein (310aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6US64_9RHIZ
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:ENN84535.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhi
Nucleoside-diphosphate-sugar epimerase
SCNpilot_cont_300_bf_scaffold_904_4
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4678..5244)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB5DD
Uncharacterized protein {ECO:0000313|EMBL:EOD67853.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM
phaF1; polyhydroxyalkanoate granule-associated protein
SCNpilot_cont_300_bf_scaffold_904_5
unknown

Not on your lists

comp(5593..5793)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_904_6
unknown

Not on your lists

6159..6299
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_904_7
unknown

Not on your lists

6393..6848
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_904_8
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6858..8120)
DNA (1263bp) protein (421aa)
carbohydrate-selective porin OprB n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488A8F
carbohydrate-selective porin oprb
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_cont_300_bf_scaffold_904_9
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8505..9851)
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae
Sensory transduction histidine kinase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VIG4_9SPHN rbh
sensory transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_904_10
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9852..10532)
DNA (681bp) protein (227aa)
UPI0003D60B1D related cluster n=1 Tax=unknown RepID=UPI0003D60B1D rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:ETI65305.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
response regulator
SCNpilot_cont_300_bf_scaffold_904_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10541..11917)
DNA (1377bp) protein (459aa)
Outer membrane efflux protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VPR3_9SPHN rbh
Sphingomonas taxi strain 30a NODE_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26031.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
Outer membrane efflux protein
SCNpilot_cont_300_bf_scaffold_904_12
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11914..15063)
DNA (3150bp) protein (1050aa)
Acriflavin resistance protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SIF0_9SPHN rbh
Scaffold7, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31921.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
acriflavin resistance protein
SCNpilot_cont_300_bf_scaffold_904_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15063..16040)
DNA (978bp) protein (326aa)
Membrane fusion protein MtrC n=1 Tax=Sphingomonas sp. LH128 RepID=J8VX31_9SPHN rbh
Membrane fusion protein MtrC {ECO:0000313|EMBL:EJU12603.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomon
hypothetical protein
SCNpilot_cont_300_bf_scaffold_904_14
unknown

Not on your lists

16235..16624
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_904_15
unknown

Not on your lists

comp(16769..16996)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_904_16
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17206..18225)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICE4_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89969.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
SCNpilot_cont_300_bf_scaffold_904_17
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18714..19466
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U5V8_MYXSD
Matrixin family protein {ECO:0000313|EMBL:KIN92473.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_904_18
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19590..20150
DNA (561bp) protein (187aa)
pilus biosynthesis protein TadE n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B36A5C
pilus assembly protein TadE
Uncharacterized protein {ECO:0000313|EMBL:BAL11151.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
SCNpilot_cont_300_bf_scaffold_904_19
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20147..20716
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC545
Uncharacterized protein {ECO:0000313|EMBL:CCW20286.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
hypothetical protein
SCNpilot_cont_300_bf_scaffold_904_20
unknown

Not on your lists

comp(20865..20990)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_904_21
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21230..22060
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MXQ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW20287.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
hypothetical protein
SCNpilot_cont_300_bf_scaffold_904_22
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22424..23014
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0U2_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48074.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
SCNpilot_cont_300_bf_scaffold_904_23
Sphingomonas sp. ATCC 31555, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23629..24390)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003785882
hypothetical protein
SCNpilot_cont_300_bf_scaffold_904_24
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25172..25729
DNA (558bp) protein (186aa)
UPI0003D69973 related cluster n=1 Tax=unknown RepID=UPI0003D69973
Phosphoesterase {ECO:0000313|EMBL:ETI65289.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
phosphoesterase PA-phosphatase-like protein
SCNpilot_cont_300_bf_scaffold_904_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26046..26771
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036AD737
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK68615.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobiu
SCNpilot_cont_300_bf_scaffold_904_26
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26888..28264)
DNA (1377bp) protein (459aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
histidine kinase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD17E rbh
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_904_27
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28251..28928)
DNA (678bp) protein (226aa)
transcriptional regulator n=1 Tax=Sphingobium RepID=UPI000262B7AE rbh
Transcriptional regulator {ECO:0000313|EMBL:KFD27663.1}; Two-component response regulator {ECO:0000313|EMBL:KEZ14389.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomona
Transcriptional regulatory protein CusR
SCNpilot_cont_300_bf_scaffold_904_28
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29085..29402
DNA (318bp) protein (106aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMF2_9SPHN
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:EJU13912.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphin
propeptide PepSY amd peptidase M4
SCNpilot_cont_300_bf_scaffold_904_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30236..30607)
DNA (372bp) protein (124aa)
Transcriptional regulator helix turn helix domain protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVS4_9RHIZ
Transcriptional regulator helix turn helix domain protein {ECO:0000313|EMBL:EHK55196.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhiz
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_904_30
unknown

Not on your lists

comp(30597..30803)
DNA (207bp) protein (69aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

View Taxonomy