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SCNpilot_cont_300_bf_scaffold_2590

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2590_1
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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263..2071
DNA (1809bp) protein (603aa)
UPI0003CEC8B1 related cluster n=1 Tax=unknown RepID=UPI0003CEC8B1 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESY66841.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_2590_2
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2537..2785
DNA (249bp) protein (83aa)
XRE family transcriptional regulator n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B66E6D
XRE family transcriptional regulator {ECO:0000313|EMBL:KKC24266.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sp
XRE family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2590_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3092..4075
DNA (984bp) protein (328aa)
toxin HipA n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6904C
Toxin-antitoxin system toxin component HipA {ECO:0000313|EMBL:GAM00353.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" so
toxin HipA
SCNpilot_cont_300_bf_scaffold_2590_4
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4420..5103)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B5L2_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS43744.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
SCNpilot_cont_300_bf_scaffold_2590_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5454..6227)
DNA (774bp) protein (258aa)
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489BDB rbh
sdhX; short chain dehydrogenase
Dehydrogenase (Related to short-chain alcohol dehydrogenase) {ECO:0000313|EMBL:AHK05011.1}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/A
SCNpilot_cont_300_bf_scaffold_2590_6
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6357..6938
DNA (582bp) protein (194aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248861B
LysR family transcriptional regulator
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KGD58438.1}; LysR family transcriptional regulator {ECO:0000313|EMBL:KIX47879.1}; TaxID=28450 species="Bacteria; Proteobac
SCNpilot_cont_300_bf_scaffold_2590_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7036..7242
DNA (207bp) protein (69aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000378BC83
Transcriptional regulator {ECO:0000313|EMBL:EPR18551.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
Putative HTH-type transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2590_8
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7193..8152)
DNA (960bp) protein (320aa)
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4D5_9BRAD
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI52815.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp.
Transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_2590_9
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8278..8688
DNA (411bp) protein (137aa)
Germin subfamily 1 member 15 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0GXR1_9SPHN
Germin subfamily 1 member 15 {ECO:0000313|EMBL:EQB08766.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_2590_10
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8955..9332
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036DAC90
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH49523.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
SCNpilot_cont_300_bf_scaffold_2590_11
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9396..11687
DNA (2292bp) protein (764aa)
Outer membrane receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G0H6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKC26921.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_2590_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11684..13027
DNA (1344bp) protein (448aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036AE7E3 rbh
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30210.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
PepSY-associated TM helix domain-containing protein rbh
SCNpilot_cont_300_bf_scaffold_2590_13
unknown

Not on your lists

comp(13069..13233)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_2590_14
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13344..13715)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H0E0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB06467.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
response regulator receiver
SCNpilot_cont_300_bf_scaffold_2590_15
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13708..16539)
DNA (2832bp) protein (944aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H2Z4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB06468.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
sensor histidine kinase
SCNpilot_cont_300_bf_scaffold_2590_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16769..17140)
DNA (372bp) protein (124aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003777E23
Displaying 16 items

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